Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1913417..1913688 | Replicon | chromosome |
| Accession | NC_012947 | ||
| Organism | Escherichia coli BL21-Gold(DE3)pLysS AG | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1913547..1913650 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1913417..1913688 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECBD_RS09315 | 1909973..1910635 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| ECBD_RS09320 | 1910659..1911315 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| ECBD_RS09325 | 1911417..1911647 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECBD_RS09330 | 1911786..1912160 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECBD_RS09335 | 1912164..1913036 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| ECBD_RS09340 | 1913049..1913390 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1913417..1913688 | - | 272 | - | - | Antitoxin |
| - | 1913547..1913650 | + | 104 | - | - | Toxin |
| ECBD_RS09350 | 1913785..1914441 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ECBD_RS09355 | 1914442..1914633 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ECBD_RS09360 | 1914738..1914974 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECBD_RS09365 | 1915092..1916531 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24076 NC_012947:1913547-1913650 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT24076 NC_012947:c1913688-1913417 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
