Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2892147..2892299 | Replicon | chromosome |
| Accession | NZ_CP094841 | ||
| Organism | Enterobacter ludwigii strain Sb-9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2892161..2892264 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2892147..2892299 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MT488_RS13885 (MT488_13885) | 2888421..2889863 | + | 1443 | WP_244047280.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MT488_RS13890 (MT488_13890) | 2889969..2890208 | + | 240 | WP_020883412.1 | YebV family protein | - |
| MT488_RS13895 (MT488_13895) | 2890243..2890887 | - | 645 | WP_244048009.1 | protein-serine/threonine phosphatase | - |
| MT488_RS13900 (MT488_13900) | 2891055..2891996 | + | 942 | WP_047356858.1 | VirK/YbjX family protein | - |
| - | 2892147..2892299 | + | 153 | - | - | Antitoxin |
| - | 2892161..2892264 | - | 104 | - | - | Toxin |
| MT488_RS13905 (MT488_13905) | 2892403..2892741 | - | 339 | WP_014170622.1 | YebY family protein | - |
| MT488_RS13910 (MT488_13910) | 2892758..2893627 | - | 870 | WP_113656004.1 | copper homeostasis membrane protein CopD | - |
| MT488_RS13915 (MT488_13915) | 2893629..2894000 | - | 372 | WP_113656005.1 | CopC domain-containing protein YobA | - |
| MT488_RS13920 (MT488_13920) | 2894138..2894368 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| MT488_RS13925 (MT488_13925) | 2894478..2895128 | + | 651 | WP_148576286.1 | carbon-nitrogen hydrolase family protein | - |
| MT488_RS13930 (MT488_13930) | 2895153..2895815 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T240634 NZ_CP094841:c2892264-2892161 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT240634 NZ_CP094841:2892147-2892299 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
