Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1839699..1839844 | Replicon | chromosome |
| Accession | NZ_CP094512 | ||
| Organism | Klebsiella pneumoniae strain SHX180 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1839735..1839837 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1839699..1839844 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MTX44_RS08915 (MTX44_08905) | 1834829..1836889 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MTX44_RS08920 (MTX44_08910) | 1836893..1837552 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MTX44_RS08925 (MTX44_08915) | 1837631..1837861 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MTX44_RS08930 (MTX44_08920) | 1837974..1838348 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MTX44_RS08935 (MTX44_08925) | 1838352..1839221 | + | 870 | WP_257695451.1 | copper homeostasis membrane protein CopD | - |
| MTX44_RS08940 (MTX44_08930) | 1839238..1839576 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1839699..1839844 | - | 146 | - | - | Antitoxin |
| - | 1839735..1839837 | + | 103 | - | - | Toxin |
| MTX44_RS08945 (MTX44_08935) | 1840213..1840356 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MTX44_RS08950 (MTX44_08940) | 1840461..1841429 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MTX44_RS08955 (MTX44_08945) | 1841586..1842239 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| MTX44_RS08960 (MTX44_08950) | 1842236..1842427 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MTX44_RS08965 (MTX44_08955) | 1842525..1842764 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MTX44_RS08970 (MTX44_08960) | 1842880..1844313 | - | 1434 | WP_021440382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T239909 NZ_CP094512:1839735-1839837 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT239909 NZ_CP094512:c1839844-1839699 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
