Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-RelB |
Location | 1596015..1596531 | Replicon | chromosome |
Accession | NZ_CP094351 | ||
Organism | Pseudomonas orientalis strain YB-76 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | MRY17_RS07010 | Protein ID | WP_181283940.1 |
Coordinates | 1596015..1596302 (-) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | MRY17_RS07015 | Protein ID | WP_057723048.1 |
Coordinates | 1596292..1596531 (-) | Length | 80 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MRY17_RS06980 (MRY17_06980) | 1591425..1591985 | - | 561 | WP_181283936.1 | glycine cleavage system protein R | - |
MRY17_RS06985 (MRY17_06985) | 1592248..1593126 | + | 879 | WP_181283937.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
MRY17_RS06990 (MRY17_06990) | 1593144..1594259 | + | 1116 | WP_181283938.1 | outer membrane protein assembly factor BamC | - |
MRY17_RS06995 (MRY17_06995) | 1594264..1595022 | + | 759 | WP_243353482.1 | MBL fold metallo-hydrolase | - |
MRY17_RS07000 (MRY17_07000) | 1595050..1595763 | + | 714 | WP_057723050.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
MRY17_RS07010 (MRY17_07010) | 1596015..1596302 | - | 288 | WP_181283940.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
MRY17_RS07015 (MRY17_07015) | 1596292..1596531 | - | 240 | WP_057723048.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
MRY17_RS07020 (MRY17_07020) | 1597235..1598461 | - | 1227 | WP_181283941.1 | MFS transporter | - |
MRY17_RS07025 (MRY17_07025) | 1598622..1598993 | - | 372 | WP_124357461.1 | transcriptional regulator | - |
MRY17_RS07030 (MRY17_07030) | 1598997..1599299 | - | 303 | WP_057723044.1 | type II toxin-antitoxin system HigB family toxin | - |
MRY17_RS07035 (MRY17_07035) | 1599601..1601226 | + | 1626 | WP_191951408.1 | methyl-accepting chemotaxis protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11179.87 Da Isoelectric Point: 10.2270
>T239762 WP_181283940.1 NZ_CP094351:c1596302-1596015 [Pseudomonas orientalis]
MTYSLDFDARALKEWQKLGDTLRQQFKKKLAKILNNPRNEANRLHGLPDCYKIKLRSSGYRLVYQVIDQEITVVVVAVDK
REHDQAYRKATDRLS
MTYSLDFDARALKEWQKLGDTLRQQFKKKLAKILNNPRNEANRLHGLPDCYKIKLRSSGYRLVYQVIDQEITVVVVAVDK
REHDQAYRKATDRLS
Download Length: 288 bp
>T239762 NZ_LS483316:1868521-1868616 [Staphylococcus aureus]
GTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAG
ACGCAATACAAAATAG
GTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAG
ACGCAATACAAAATAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 8973.39 Da Isoelectric Point: 4.6017
>AT239762 WP_057723048.1 NZ_CP094351:c1596531-1596292 [Pseudomonas orientalis]
MASINVRIDDDLKARAYLELEKLGVTPSELMRQALQYVAERGQLPFKPVLMTEEDEALMATVRERLASPQRVKVSLDDL
MASINVRIDDDLKARAYLELEKLGVTPSELMRQALQYVAERGQLPFKPVLMTEEDEALMATVRERLASPQRVKVSLDDL
Download Length: 240 bp
>AT239762 NZ_LS483316:c1868703-1868644 [Staphylococcus aureus]
ACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGGG
ACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGGG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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