Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1905779..1905889 Replicon chromosome
Accession NZ_CP094324
Organism Edwardsiella anguillarum strain Eco2413

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1905781..1905882 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1905779..1905889 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ084_RS09030 (MQ084_09030) 1901539..1901820 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ084_RS09035 (MQ084_09035) 1901810..1902061 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ084_RS09040 (MQ084_09040) 1902349..1902840 + 492 WP_225865179.1 hypothetical protein -
MQ084_RS09045 (MQ084_09045) 1902827..1903174 + 348 WP_144242832.1 hypothetical protein -
MQ084_RS09050 (MQ084_09050) 1903546..1905420 + 1875 WP_034165826.1 PhoX family phosphatase -
- 1905779..1905889 + 111 - - Antitoxin
- 1905781..1905882 - 102 - - Toxin
MQ084_RS09055 (MQ084_09055) 1906857..1910021 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1868845..1916171 47326


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239657 NZ_CP094324:c1905882-1905781 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239657 NZ_CP094324:1905779-1905889 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References