Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 1168743..1169335 Replicon chromosome
Accession NZ_CP094324
Organism Edwardsiella anguillarum strain Eco2413

Toxin (Protein)


Gene name Hha Uniprot ID D0ZEC2
Locus tag MQ084_RS05430 Protein ID WP_012847872.1
Coordinates 1168743..1168946 (-) Length 68 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID A0A034T4H2
Locus tag MQ084_RS05435 Protein ID WP_034163649.1
Coordinates 1168967..1169335 (-) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ084_RS05400 (MQ084_05400) 1164539..1165000 + 462 WP_034163655.1 Lrp/AsnC family transcriptional regulator -
MQ084_RS05405 (MQ084_05405) 1165278..1165616 + 339 WP_034163654.1 P-II family nitrogen regulator -
MQ084_RS05410 (MQ084_05410) 1165637..1166917 + 1281 WP_034163814.1 ammonium transporter AmtB -
MQ084_RS05415 (MQ084_05415) 1166952..1167818 - 867 WP_034163652.1 acyl-CoA thioesterase II -
MQ084_RS05420 (MQ084_05420) 1167927..1168256 - 330 WP_034163651.1 MGMT family protein -
MQ084_RS05430 (MQ084_05430) 1168743..1168946 - 204 WP_012847872.1 HHA domain-containing protein Toxin
MQ084_RS05435 (MQ084_05435) 1168967..1169335 - 369 WP_034163649.1 Hha toxicity modulator TomB Antitoxin
MQ084_RS05440 (MQ084_05440) 1169702..1172854 - 3153 WP_034163648.1 efflux RND transporter permease subunit -
MQ084_RS05445 (MQ084_05445) 1172898..1174082 - 1185 WP_034163646.1 efflux RND transporter periplasmic adaptor subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(8-64)

Antitoxin

Biofilm formation regulator YbaJ

(1-115)


Sequences

Toxin        


Download         Length: 68 a.a.        Molecular weight: 8103.37 Da        Isoelectric Point: 5.0914

>T239655 WP_012847872.1 NZ_CP094324:c1168946-1168743 [Edwardsiella anguillarum]
MTKIDYLMKLRKCTTLDTLERVIEKNKYELSDDELEIFYSAADHRLAELTMNKLYDKIPAEVWQYVR

Download         Length: 204 bp

>T239655 NZ_LS483297:c3709468-3709070 [Escherichia coli]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACGACTCGTTTACCTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGTGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGAAGCGCATTTGGTATATTGTCAGGGTGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACAGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 14118.85 Da        Isoelectric Point: 6.2108

>AT239655 WP_034163649.1 NZ_CP094324:c1169335-1168967 [Edwardsiella anguillarum]
MDEYTSYQHDIAELKYLCDSLYHQGIDVLGESHHGWVSDPTAKVNLQLNELIEHIASVAQSFKIKYPRHSDLAEILDDYL
DETYALFGAYSVSETALRHWLRTKRRVAYCLAHEKRNAALHV

Download         Length: 369 bp

>AT239655 NZ_LS483297:c3709764-3709471 [Escherichia coli]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATTACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
GGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTG
CTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGAGCT
GAAAAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A034SMG4

Antitoxin

Source ID Structure
AlphaFold DB A0A034T4H2

References