Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1820163..1820273 Replicon chromosome
Accession NZ_CP094323
Organism Edwardsiella anguillarum strain 43472

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1820165..1820266 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1820163..1820273 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ087_RS08420 (MQ087_08410) 1815923..1816204 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ087_RS08425 (MQ087_08415) 1816194..1816445 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ087_RS08430 (MQ087_08420) 1816733..1817224 + 492 WP_283294721.1 hypothetical protein -
MQ087_RS08435 (MQ087_08425) 1817211..1817525 + 315 WP_283294722.1 hypothetical protein -
MQ087_RS08440 (MQ087_08430) 1817930..1819804 + 1875 WP_045427621.1 PhoX family phosphatase -
- 1820163..1820273 + 111 - - Antitoxin
- 1820165..1820266 - 102 - - Toxin
MQ087_RS08445 (MQ087_08435) 1821241..1824405 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1780993..1826412 45419


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239646 NZ_CP094323:c1820266-1820165 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239646 NZ_CP094323:1820163-1820273 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References