Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1820126..1820236 Replicon chromosome
Accession NZ_CP094322
Organism Edwardsiella anguillarum strain 43664

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1820128..1820229 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1820126..1820236 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ093_RS08430 (MQ093_08425) 1815886..1816167 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ093_RS08435 (MQ093_08430) 1816157..1816408 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ093_RS08440 (MQ093_08435) 1816696..1817187 + 492 WP_283294721.1 hypothetical protein -
MQ093_RS08445 (MQ093_08440) 1817174..1817488 + 315 WP_283294722.1 hypothetical protein -
MQ093_RS08450 (MQ093_08445) 1817893..1819767 + 1875 WP_045427621.1 PhoX family phosphatase -
- 1820126..1820236 + 111 - - Antitoxin
- 1820128..1820229 - 102 - - Toxin
MQ093_RS08455 (MQ093_08450) 1821204..1824368 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1780956..1826375 45419


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239634 NZ_CP094322:c1820229-1820128 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239634 NZ_CP094322:1820126-1820236 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References