Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1825598..1825708 Replicon chromosome
Accession NZ_CP094321
Organism Edwardsiella anguillarum strain 43473

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1825600..1825701 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1825598..1825708 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ094_RS08465 (MQ094_08455) 1821358..1821639 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ094_RS08470 (MQ094_08460) 1821629..1821880 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ094_RS08475 (MQ094_08465) 1822168..1822659 + 492 WP_283294721.1 hypothetical protein -
MQ094_RS08480 (MQ094_08470) 1822646..1822960 + 315 WP_283294722.1 hypothetical protein -
MQ094_RS08485 (MQ094_08475) 1823365..1825239 + 1875 WP_045427621.1 PhoX family phosphatase -
- 1825598..1825708 + 111 - - Antitoxin
- 1825600..1825701 - 102 - - Toxin
MQ094_RS08490 (MQ094_08480) 1826676..1829840 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1786423..1836442 50019


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239622 NZ_CP094321:c1825701-1825600 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239622 NZ_CP094321:1825598-1825708 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References