Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1825596..1825706 Replicon chromosome
Accession NZ_CP094320
Organism Edwardsiella anguillarum strain 43659

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1825598..1825699 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1825596..1825706 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ089_RS08450 (MQ089_08440) 1821356..1821637 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ089_RS08455 (MQ089_08445) 1821627..1821878 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ089_RS08460 (MQ089_08450) 1822166..1822657 + 492 WP_283294721.1 hypothetical protein -
MQ089_RS08465 (MQ089_08455) 1822644..1822958 + 315 WP_283294722.1 hypothetical protein -
MQ089_RS08470 (MQ089_08460) 1823363..1825237 + 1875 WP_045427621.1 PhoX family phosphatase -
- 1825596..1825706 + 111 - - Antitoxin
- 1825598..1825699 - 102 - - Toxin
MQ089_RS08475 (MQ089_08465) 1826674..1829838 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1786420..1836440 50020


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239610 NZ_CP094320:c1825699-1825598 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239610 NZ_CP094320:1825596-1825706 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References