Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1825595..1825705 | Replicon | chromosome |
| Accession | NZ_CP094319 | ||
| Organism | Edwardsiella anguillarum strain 43651 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1825597..1825698 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1825595..1825705 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQ085_RS08460 (MQ085_08450) | 1821355..1821636 | - | 282 | WP_015871319.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MQ085_RS08465 (MQ085_08455) | 1821626..1821877 | - | 252 | WP_015871318.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| MQ085_RS08470 (MQ085_08460) | 1822165..1822656 | + | 492 | WP_283294721.1 | hypothetical protein | - |
| MQ085_RS08475 (MQ085_08465) | 1822643..1822957 | + | 315 | WP_283294722.1 | hypothetical protein | - |
| MQ085_RS08480 (MQ085_08470) | 1823362..1825236 | + | 1875 | WP_045427621.1 | PhoX family phosphatase | - |
| - | 1825595..1825705 | + | 111 | - | - | Antitoxin |
| - | 1825597..1825698 | - | 102 | - | - | Toxin |
| MQ085_RS08485 (MQ085_08475) | 1826673..1829837 | + | 3165 | WP_158409708.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1786419..1836439 | 50020 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T239598 NZ_CP094319:c1825698-1825597 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT239598 NZ_CP094319:1825595-1825705 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
