Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1825595..1825705 Replicon chromosome
Accession NZ_CP094319
Organism Edwardsiella anguillarum strain 43651

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1825597..1825698 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1825595..1825705 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ085_RS08460 (MQ085_08450) 1821355..1821636 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ085_RS08465 (MQ085_08455) 1821626..1821877 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ085_RS08470 (MQ085_08460) 1822165..1822656 + 492 WP_283294721.1 hypothetical protein -
MQ085_RS08475 (MQ085_08465) 1822643..1822957 + 315 WP_283294722.1 hypothetical protein -
MQ085_RS08480 (MQ085_08470) 1823362..1825236 + 1875 WP_045427621.1 PhoX family phosphatase -
- 1825595..1825705 + 111 - - Antitoxin
- 1825597..1825698 - 102 - - Toxin
MQ085_RS08485 (MQ085_08475) 1826673..1829837 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1786419..1836439 50020


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239598 NZ_CP094319:c1825698-1825597 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239598 NZ_CP094319:1825595-1825705 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References