Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2001365..2001475 Replicon chromosome
Accession NZ_CP094317
Organism Edwardsiella anguillarum strain R17-63

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2001372..2001473 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2001365..2001475 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ083_RS08925 (MQ083_08910) 1997233..2000592 - 3360 WP_081926440.1 autotransporter outer membrane beta-barrel domain-containing protein -
- 2001365..2001475 - 111 - - Antitoxin
- 2001372..2001473 + 102 - - Toxin
MQ083_RS08930 (MQ083_08915) 2001834..2003708 - 1875 WP_045427621.1 PhoX family phosphatase -
MQ083_RS08935 (MQ083_08920) 2004080..2004427 - 348 WP_144242832.1 hypothetical protein -
MQ083_RS08940 (MQ083_08925) 2004414..2004905 - 492 WP_225865179.1 hypothetical protein -
MQ083_RS08945 (MQ083_08930) 2005193..2005444 + 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ083_RS08950 (MQ083_08935) 2005434..2005715 + 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1991083..2038691 47608


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239582 NZ_CP094317:2001372-2001473 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239582 NZ_CP094317:c2001475-2001365 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References