Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1905773..1905883 Replicon chromosome
Accession NZ_CP094315
Organism Edwardsiella anguillarum strain Eco2417

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1905775..1905876 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1905773..1905883 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ092_RS09025 (MQ092_09020) 1901533..1901814 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ092_RS09030 (MQ092_09025) 1901804..1902055 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ092_RS09035 (MQ092_09030) 1902343..1902834 + 492 WP_225865179.1 hypothetical protein -
MQ092_RS09040 (MQ092_09035) 1902821..1903168 + 348 WP_144242832.1 hypothetical protein -
MQ092_RS09045 (MQ092_09040) 1903540..1905414 + 1875 WP_034165826.1 PhoX family phosphatase -
- 1905773..1905883 + 111 - - Antitoxin
- 1905775..1905876 - 102 - - Toxin
MQ092_RS09050 (MQ092_09045) 1906851..1910015 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1868839..1916165 47326


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239570 NZ_CP094315:c1905876-1905775 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239570 NZ_CP094315:1905773-1905883 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References