Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1905783..1905893 | Replicon | chromosome |
| Accession | NZ_CP094313 | ||
| Organism | Edwardsiella anguillarum strain R18-14-16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1905785..1905886 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1905783..1905893 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQ086_RS09030 (MQ086_09025) | 1901543..1901824 | - | 282 | WP_015871319.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MQ086_RS09035 (MQ086_09030) | 1901814..1902065 | - | 252 | WP_015871318.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| MQ086_RS09040 (MQ086_09035) | 1902353..1902844 | + | 492 | WP_225865179.1 | hypothetical protein | - |
| MQ086_RS09045 (MQ086_09040) | 1902831..1903178 | + | 348 | WP_144242832.1 | hypothetical protein | - |
| MQ086_RS09050 (MQ086_09045) | 1903550..1905424 | + | 1875 | WP_034165826.1 | PhoX family phosphatase | - |
| - | 1905783..1905893 | + | 111 | - | - | Antitoxin |
| - | 1905785..1905886 | - | 102 | - | - | Toxin |
| MQ086_RS09055 (MQ086_09050) | 1906861..1910025 | + | 3165 | WP_158409708.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1868849..1916175 | 47326 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T239557 NZ_CP094313:c1905886-1905785 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT239557 NZ_CP094313:1905783-1905893 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
