Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1905730..1905840 Replicon chromosome
Accession NZ_CP094304
Organism Edwardsiella anguillarum strain R18-08

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1905732..1905833 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1905730..1905840 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ088_RS09035 (MQ088_09030) 1901490..1901771 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ088_RS09040 (MQ088_09035) 1901761..1902012 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ088_RS09045 (MQ088_09040) 1902300..1902791 + 492 WP_225865179.1 hypothetical protein -
MQ088_RS09050 (MQ088_09045) 1902778..1903125 + 348 WP_144242832.1 hypothetical protein -
MQ088_RS09055 (MQ088_09050) 1903497..1905371 + 1875 WP_034165826.1 PhoX family phosphatase -
- 1905730..1905840 + 111 - - Antitoxin
- 1905732..1905833 - 102 - - Toxin
MQ088_RS09060 (MQ088_09055) 1906808..1909972 + 3165 WP_158409708.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1868796..1920357 51561


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239504 NZ_CP094304:c1905833-1905732 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239504 NZ_CP094304:1905730-1905840 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References