Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1905778..1905888 Replicon chromosome
Accession NZ_CP094302
Organism Edwardsiella anguillarum strain R18-35-2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1905780..1905881 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1905778..1905888 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ095_RS09025 (MQ095_09020) 1901538..1901819 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ095_RS09030 (MQ095_09025) 1901809..1902060 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ095_RS09035 (MQ095_09030) 1902348..1902839 + 492 WP_225865179.1 hypothetical protein -
MQ095_RS09040 (MQ095_09035) 1902826..1903173 + 348 WP_144242832.1 hypothetical protein -
MQ095_RS09045 (MQ095_09040) 1903545..1905419 + 1875 WP_034165826.1 PhoX family phosphatase -
- 1905778..1905888 + 111 - - Antitoxin
- 1905780..1905881 - 102 - - Toxin
MQ095_RS09050 (MQ095_09045) 1906661..1910020 + 3360 WP_081926440.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1868844..1916170 47326


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239491 NZ_CP094302:c1905881-1905780 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239491 NZ_CP094302:1905778-1905888 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References