Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1872392..1872538 | Replicon | chromosome |
| Accession | NZ_CP094280 | ||
| Organism | Klebsiella aerogenes strain NY1464 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1872427..1872530 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1872392..1872538 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQE09_RS08995 | 1867501..1869561 | + | 2061 | WP_045376138.1 | oligopeptidase B | - |
| MQE09_RS09000 | 1869564..1870223 | - | 660 | WP_045376135.1 | exodeoxyribonuclease X | - |
| MQE09_RS09005 | 1870303..1870533 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| MQE09_RS09010 | 1870668..1871042 | + | 375 | WP_047037311.1 | CopC domain-containing protein YobA | - |
| MQE09_RS09015 | 1871046..1871915 | + | 870 | WP_045376129.1 | copper homeostasis membrane protein CopD | - |
| MQE09_RS09020 | 1871929..1872270 | + | 342 | WP_075052416.1 | YebY family protein | - |
| - | 1872392..1872538 | - | 147 | - | - | Antitoxin |
| - | 1872427..1872530 | + | 104 | - | - | Toxin |
| MQE09_RS09025 | 1872658..1873611 | - | 954 | WP_224108346.1 | spore coat U domain-containing protein | - |
| MQE09_RS09030 | 1873624..1875948 | - | 2325 | WP_224108347.1 | fimbria/pilus outer membrane usher protein | - |
| MQE09_RS09035 | 1875951..1876700 | - | 750 | WP_047037323.1 | molecular chaperone | - |
| MQE09_RS09040 | 1876718..1877236 | - | 519 | WP_049056341.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T239451 NZ_CP094280:1872427-1872530 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT239451 NZ_CP094280:c1872538-1872392 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
