Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2028939..2029084 | Replicon | chromosome |
| Accession | NZ_CP094237 | ||
| Organism | Klebsiella pneumoniae strain K41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2028975..2029077 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2028939..2029084 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQE26_RS09760 (MQE26_09760) | 2024069..2026129 | + | 2061 | WP_047694778.1 | oligopeptidase B | - |
| MQE26_RS09765 (MQE26_09765) | 2026133..2026792 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MQE26_RS09770 (MQE26_09770) | 2026871..2027101 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MQE26_RS09775 (MQE26_09775) | 2027214..2027588 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| MQE26_RS09780 (MQE26_09780) | 2027592..2028461 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| MQE26_RS09785 (MQE26_09785) | 2028478..2028816 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2028939..2029084 | - | 146 | - | - | Antitoxin |
| - | 2028975..2029077 | + | 103 | - | - | Toxin |
| MQE26_RS09790 (MQE26_09790) | 2029452..2029595 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MQE26_RS09795 (MQE26_09795) | 2029700..2030668 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MQE26_RS09800 (MQE26_09800) | 2030825..2031478 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| MQE26_RS09805 (MQE26_09805) | 2031475..2031666 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MQE26_RS09810 (MQE26_09810) | 2031764..2032003 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MQE26_RS09815 (MQE26_09815) | 2032119..2033552 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T239350 NZ_CP094237:2028975-2029077 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT239350 NZ_CP094237:c2029084-2028939 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
