Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4137896..4138041 | Replicon | chromosome |
| Accession | NZ_CP094227 | ||
| Organism | Klebsiella pneumoniae strain Bio3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4137903..4138005 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4137896..4138041 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MOO48_RS19695 | 4133427..4134860 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MOO48_RS19700 | 4134976..4135215 | + | 240 | WP_002911393.1 | YebV family protein | - |
| MOO48_RS19705 | 4135313..4135504 | + | 192 | WP_002911395.1 | YebW family protein | - |
| MOO48_RS19710 | 4135501..4136154 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MOO48_RS19715 | 4136311..4137279 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MOO48_RS19720 | 4137384..4137527 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4137896..4138041 | + | 146 | - | - | Antitoxin |
| - | 4137903..4138005 | - | 103 | - | - | Toxin |
| MOO48_RS19725 | 4138164..4138502 | - | 339 | WP_002911404.1 | YebY family protein | - |
| MOO48_RS19730 | 4138519..4139388 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| MOO48_RS19735 | 4139392..4139766 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MOO48_RS19740 | 4139879..4140109 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MOO48_RS19745 | 4140188..4140847 | + | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| MOO48_RS19750 | 4140851..4142911 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T239318 NZ_CP094227:c4138005-4137903 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT239318 NZ_CP094227:4137896-4138041 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
