Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2508278..2508371 | Replicon | chromosome |
| Accession | NC_012880 | ||
| Organism | Dickeya dadantii Ech703 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2508282..2508371 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2508278..2508371 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DD703_RS10565 | 2503502..2503960 | - | 459 | WP_015853814.1 | hypothetical protein | - |
| DD703_RS20560 | 2505365..2505592 | - | 228 | WP_015853816.1 | YdcH family protein | - |
| DD703_RS10580 | 2506022..2506945 | + | 924 | WP_015853817.1 | kdo(2)-lipid IV(A) palmitoleoyltransferase | - |
| DD703_RS20915 | 2507000..2507200 | - | 201 | WP_155961687.1 | hypothetical protein | - |
| DD703_RS10585 | 2507523..2507735 | - | 213 | WP_015853818.1 | RNA chaperone/antiterminator CspA | - |
| - | 2508278..2508371 | + | 94 | - | - | Antitoxin |
| - | 2508282..2508371 | - | 90 | - | - | Toxin |
| DD703_RS10590 | 2508562..2508900 | - | 339 | WP_023638320.1 | YebY family protein | - |
| DD703_RS10595 | 2509110..2509610 | - | 501 | WP_015853820.1 | non-heme ferritin | - |
| DD703_RS10600 | 2510030..2510908 | - | 879 | WP_015853821.1 | copper homeostasis membrane protein CopD | - |
| DD703_RS10605 | 2511145..2511375 | + | 231 | WP_015853822.1 | DNA polymerase III subunit theta | - |
| DD703_RS20565 | 2511381..2511518 | - | 138 | WP_015853823.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2464514..2537859 | 73345 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 bp
>T23912 NC_012880:c2508371-2508282 [Dickeya paradisiaca Ech703]
GCCTGCACAAATGCCAACTTTTAGCGCACGGCTCTCTCCTAAGAGCCATTTCCCTAGACCGGATACAGGAATCGTATTCG
GTCTTTTTTT
GCCTGCACAAATGCCAACTTTTAGCGCACGGCTCTCTCCTAAGAGCCATTTCCCTAGACCGGATACAGGAATCGTATTCG
GTCTTTTTTT
Antitoxin
Download Length: 94 bp
>AT23912 NC_012880:2508278-2508371 [Dickeya paradisiaca Ech703]
GATAAAAAAAAGACCGAATACGATTCCTGTATCCGGTCTAGGGAAATGGCTCTTAGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTGTGCAGGC
GATAAAAAAAAGACCGAATACGATTCCTGTATCCGGTCTAGGGAAATGGCTCTTAGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTGTGCAGGC
