Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 227092..227237 | Replicon | chromosome |
| Accession | NZ_CP093856 | ||
| Organism | Klebsiella pneumoniae strain Bio30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 227128..227230 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 227092..227237 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MOQ79_RS01060 | 222222..224282 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MOQ79_RS01065 | 224286..224945 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MOQ79_RS01070 | 225024..225254 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MOQ79_RS01075 | 225367..225741 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MOQ79_RS01080 | 225745..226614 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| MOQ79_RS01085 | 226631..226969 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 227092..227237 | - | 146 | - | - | Antitoxin |
| - | 227128..227230 | + | 103 | - | - | Toxin |
| MOQ79_RS01090 | 227605..227748 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MOQ79_RS01095 | 227853..228821 | - | 969 | WP_162822694.1 | VirK/YbjX family protein | - |
| MOQ79_RS01100 | 228978..229631 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| MOQ79_RS01105 | 229628..229819 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MOQ79_RS01110 | 229917..230156 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MOQ79_RS01115 | 230272..231705 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T238948 NZ_CP093856:227128-227230 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT238948 NZ_CP093856:c227237-227092 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
