Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1122615..1122886 | Replicon | chromosome |
| Accession | NZ_CP093548 | ||
| Organism | Escherichia coli strain YL03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1122653..1122756 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1122615..1122886 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPJ80_RS05760 | 1119772..1121211 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MPJ80_RS05765 | 1121329..1121565 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MPJ80_RS05770 | 1121670..1121861 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MPJ80_RS05775 | 1121862..1122518 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 1122615..1122886 | + | 272 | - | - | Antitoxin |
| - | 1122653..1122756 | - | 104 | - | - | Toxin |
| MPJ80_RS05780 | 1122914..1123255 | - | 342 | WP_001520705.1 | YebY family protein | - |
| MPJ80_RS05785 | 1123268..1124140 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| MPJ80_RS05790 | 1124144..1124518 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| MPJ80_RS05795 | 1124657..1124887 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MPJ80_RS05800 | 1124989..1125645 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MPJ80_RS05805 | 1125669..1126331 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T238861 NZ_CP093548:c1122756-1122653 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT238861 NZ_CP093548:1122615-1122886 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
