Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061664..2061809 | Replicon | chromosome |
| Accession | NZ_CP093481 | ||
| Organism | Klebsiella pneumoniae strain VA564 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061700..2061802 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061664..2061809 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MO411_RS10100 | 2056794..2058854 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MO411_RS10105 | 2058858..2059517 | - | 660 | WP_080893182.1 | exodeoxyribonuclease X | - |
| MO411_RS10110 | 2059596..2059826 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MO411_RS10115 | 2059939..2060313 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MO411_RS10120 | 2060317..2061186 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MO411_RS10125 | 2061203..2061541 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 2061664..2061809 | - | 146 | - | - | Antitoxin |
| - | 2061700..2061802 | + | 103 | - | - | Toxin |
| MO411_RS10130 | 2062178..2062321 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MO411_RS10135 | 2062426..2063394 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| MO411_RS10140 | 2063551..2064204 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| MO411_RS10145 | 2064201..2064392 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MO411_RS10150 | 2064490..2064729 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MO411_RS10155 | 2064845..2066278 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T238719 NZ_CP093481:2061700-2061802 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT238719 NZ_CP093481:c2061809-2061664 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
