Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995968..1996113 | Replicon | chromosome |
| Accession | NZ_CP093471 | ||
| Organism | Klebsiella pneumoniae strain VA591 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1996004..1996106 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995968..1996113 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MO415_RS09640 | 1991098..1993158 | + | 2061 | WP_032419805.1 | oligopeptidase B | - |
| MO415_RS09645 | 1993162..1993821 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MO415_RS09650 | 1993900..1994130 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MO415_RS09655 | 1994243..1994617 | + | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| MO415_RS09660 | 1994621..1995490 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MO415_RS09665 | 1995507..1995845 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1995968..1996113 | - | 146 | - | - | Antitoxin |
| - | 1996004..1996106 | + | 103 | - | - | Toxin |
| MO415_RS09670 | 1996481..1996624 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MO415_RS09675 | 1996729..1997697 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| MO415_RS09680 | 1997854..1998507 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| MO415_RS09685 | 1998504..1998695 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MO415_RS09690 | 1998793..1999032 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MO415_RS09695 | 1999148..2000581 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T238674 NZ_CP093471:1996004-1996106 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT238674 NZ_CP093471:c1996113-1995968 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
