Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3207280..3207425 | Replicon | chromosome |
| Accession | NZ_CP093465 | ||
| Organism | Klebsiella pneumoniae strain VA681 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3207287..3207389 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3207280..3207425 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MO412_RS15850 (MO412_15840) | 3202812..3204245 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MO412_RS15855 (MO412_15845) | 3204361..3204600 | + | 240 | WP_002911393.1 | YebV family protein | - |
| MO412_RS15860 (MO412_15850) | 3204698..3204889 | + | 192 | WP_002911395.1 | YebW family protein | - |
| MO412_RS15865 (MO412_15855) | 3204886..3205539 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MO412_RS15870 (MO412_15860) | 3205696..3206664 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MO412_RS15875 (MO412_15865) | 3206769..3206912 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3207280..3207425 | + | 146 | - | - | Antitoxin |
| - | 3207287..3207389 | - | 103 | - | - | Toxin |
| MO412_RS15880 (MO412_15870) | 3207548..3207886 | - | 339 | WP_016529031.1 | YebY family protein | - |
| MO412_RS15885 (MO412_15875) | 3207903..3208772 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MO412_RS15890 (MO412_15880) | 3208776..3209150 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MO412_RS15895 (MO412_15885) | 3209263..3209493 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MO412_RS15900 (MO412_15890) | 3209572..3210231 | + | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| MO412_RS15905 (MO412_15895) | 3210235..3212295 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T238659 NZ_CP093465:c3207389-3207287 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT238659 NZ_CP093465:3207280-3207425 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
