Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1893734..1893879 | Replicon | chromosome |
| Accession | NZ_CP093458 | ||
| Organism | Klebsiella pneumoniae strain VA684 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1893770..1893872 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1893734..1893879 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MO416_RS09175 (MO416_09170) | 1888864..1890924 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MO416_RS09180 (MO416_09175) | 1890928..1891587 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MO416_RS09185 (MO416_09180) | 1891666..1891896 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MO416_RS09190 (MO416_09185) | 1892009..1892383 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MO416_RS09195 (MO416_09190) | 1892387..1893256 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| MO416_RS09200 (MO416_09195) | 1893273..1893611 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1893734..1893879 | - | 146 | - | - | Antitoxin |
| - | 1893770..1893872 | + | 103 | - | - | Toxin |
| MO416_RS09205 (MO416_09200) | 1894248..1894391 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| MO416_RS09210 (MO416_09205) | 1894496..1895464 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MO416_RS09215 (MO416_09210) | 1895621..1896274 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MO416_RS09220 (MO416_09215) | 1896271..1896462 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MO416_RS09225 (MO416_09220) | 1896560..1896799 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MO416_RS09230 (MO416_09225) | 1896915..1898348 | - | 1434 | WP_064156927.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T238636 NZ_CP093458:1893770-1893872 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT238636 NZ_CP093458:c1893879-1893734 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
