Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2114347..2114492 | Replicon | chromosome |
| Accession | NZ_CP093451 | ||
| Organism | Klebsiella pneumoniae strain VA833 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2114383..2114485 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2114347..2114492 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MO408_RS10515 | 2109478..2111538 | + | 2061 | Protein_2058 | oligopeptidase B | - |
| MO408_RS10520 | 2111542..2112201 | - | 660 | WP_080893182.1 | exodeoxyribonuclease X | - |
| MO408_RS10525 | 2112280..2112510 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MO408_RS10530 | 2112623..2112997 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MO408_RS10535 | 2113001..2113869 | + | 869 | Protein_2062 | copper homeostasis membrane protein CopD | - |
| MO408_RS10540 | 2113886..2114224 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 2114347..2114492 | - | 146 | - | - | Antitoxin |
| - | 2114383..2114485 | + | 103 | - | - | Toxin |
| MO408_RS10545 | 2114861..2115004 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MO408_RS10550 | 2115109..2116077 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| MO408_RS10555 | 2116234..2116887 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| MO408_RS10560 | 2116884..2117075 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MO408_RS10565 | 2117172..2117411 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MO408_RS10570 | 2117526..2118958 | - | 1433 | Protein_2069 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T238615 NZ_CP093451:2114383-2114485 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT238615 NZ_CP093451:c2114492-2114347 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
