Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071122..2071268 | Replicon | chromosome |
| Accession | NZ_CP093445 | ||
| Organism | Salmonella enterica subsp. enterica serovar Abeokuta strain OG19FER4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2071160..2071263 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071122..2071268 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MOV10_RS09990 | 2067546..2068244 | - | 699 | WP_000944278.1 | exodeoxyribonuclease X | - |
| MOV10_RS09995 | 2068268..2068924 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| MOV10_RS10000 | 2069032..2069262 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| MOV10_RS10005 | 2069400..2069774 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| MOV10_RS10010 | 2069775..2070650 | + | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| MOV10_RS10015 | 2070667..2071020 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2071122..2071268 | - | 147 | - | - | Antitoxin |
| - | 2071160..2071263 | + | 104 | - | - | Toxin |
| MOV10_RS10020 | 2071394..2071740 | - | 347 | Protein_1963 | tyrosine-type recombinase/integrase | - |
| MOV10_RS10025 | 2071752..2071835 | + | 84 | Protein_1964 | phage tail protein | - |
| MOV10_RS10030 | 2072009..2074429 | + | 2421 | WP_136160092.1 | type III secretion system effector SspH3 | - |
| MOV10_RS10035 | 2074531..2075062 | + | 532 | Protein_1966 | transposase | - |
| MOV10_RS10040 | 2075205..2075345 | - | 141 | WP_031607778.1 | hypothetical protein | - |
| MOV10_RS10045 | 2075511..2075780 | - | 270 | WP_011233024.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2074721..2075062 | 341 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T238594 NZ_CP093445:2071160-2071263 [Salmonella enterica subsp. enterica serovar Abeokuta]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT238594 NZ_CP093445:c2071268-2071122 [Salmonella enterica subsp. enterica serovar Abeokuta]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
