Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1813149..1813420 | Replicon | chromosome |
| Accession | NC_012759 | ||
| Organism | Escherichia coli BW2952 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1813187..1813290 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1813149..1813420 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWG_RS09075 (BWG_1649) | 1810306..1811745 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BWG_RS09080 (BWG_1650) | 1811863..1812099 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BWG_RS09085 (BWG_1651) | 1812204..1812395 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BWG_RS09090 (BWG_1652) | 1812396..1813052 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1813149..1813420 | + | 272 | - | - | Antitoxin |
| - | 1813187..1813290 | - | 104 | - | - | Toxin |
| BWG_RS09100 (BWG_1653) | 1813448..1813789 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BWG_RS09105 (BWG_1654) | 1813802..1814674 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| BWG_RS09110 (BWG_1655) | 1814678..1815052 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BWG_RS09115 (BWG_1656) | 1815191..1815421 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWG_RS09120 (BWG_1657) | 1815523..1816179 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BWG_RS09125 (BWG_1658) | 1816203..1816865 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T23855 NC_012759:c1813290-1813187 [Escherichia coli BW2952]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT23855 NC_012759:1813149-1813420 [Escherichia coli BW2952]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
