Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064163..2064306 | Replicon | chromosome |
| Accession | NZ_CP093392 | ||
| Organism | Salmonella enterica strain P201982 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064201..2064304 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064163..2064306 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MOV21_RS10290 | 2060587..2061285 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| MOV21_RS10295 | 2061309..2061965 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| MOV21_RS10300 | 2062073..2062303 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| MOV21_RS10305 | 2062441..2062815 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| MOV21_RS10310 | 2062816..2063691 | + | 876 | WP_000979691.1 | copper homeostasis membrane protein CopD | - |
| MOV21_RS10315 | 2063708..2064061 | + | 354 | WP_000722367.1 | YebY family protein | - |
| - | 2064163..2064306 | - | 144 | - | - | Antitoxin |
| - | 2064201..2064304 | + | 104 | - | - | Toxin |
| MOV21_RS10320 | 2064434..2065513 | - | 1080 | WP_086126941.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| MOV21_RS10325 | 2065494..2065766 | - | 273 | WP_031617245.1 | excisionase | - |
| MOV21_RS10330 | 2065839..2066063 | - | 225 | WP_001534361.1 | hypothetical protein | - |
| MOV21_RS10335 | 2066353..2066538 | - | 186 | WP_001534356.1 | DUF1187 family protein | - |
| MOV21_RS10340 | 2066585..2067415 | - | 831 | WP_086126940.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sseI/srfH / sspH2 / sopE2 / sspH2 / sspH1 / sspH2 | 2001466..2130415 | 128949 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T238420 NZ_CP093392:2064201-2064304 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT238420 NZ_CP093392:c2064306-2064163 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
