Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1363576..1363744 | Replicon | chromosome |
| Accession | NZ_CP093376 | ||
| Organism | Cronobacter sakazakii strain 70402496 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1363638..1363741 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1363576..1363744 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MOQ97_RS06925 (MOQ97_06925) | 1358726..1360789 | + | 2064 | WP_242190556.1 | oligopeptidase B | - |
| MOQ97_RS06930 (MOQ97_06930) | 1360786..1361448 | - | 663 | WP_004386664.1 | exodeoxyribonuclease X | - |
| MOQ97_RS06935 (MOQ97_06935) | 1361521..1361751 | - | 231 | WP_004386666.1 | DNA polymerase III subunit theta | - |
| MOQ97_RS06940 (MOQ97_06940) | 1361898..1362272 | + | 375 | WP_004386667.1 | CopC domain-containing protein YobA | - |
| MOQ97_RS06945 (MOQ97_06945) | 1362277..1363146 | + | 870 | WP_015386606.1 | copper homeostasis membrane protein CopD | - |
| MOQ97_RS06950 (MOQ97_06950) | 1363161..1363499 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 1363576..1363744 | - | 169 | - | - | Antitoxin |
| - | 1363638..1363741 | + | 104 | - | - | Toxin |
| MOQ97_RS06955 (MOQ97_06955) | 1364200..1364529 | + | 330 | WP_012124471.1 | hypothetical protein | - |
| MOQ97_RS06960 (MOQ97_06960) | 1364483..1364818 | + | 336 | WP_004386671.1 | hypothetical protein | - |
| MOQ97_RS06965 (MOQ97_06965) | 1365164..1365256 | + | 93 | WP_004386672.1 | hypothetical protein | - |
| MOQ97_RS06970 (MOQ97_06970) | 1365615..1366259 | + | 645 | WP_004386674.1 | metallophosphoesterase | - |
| MOQ97_RS06975 (MOQ97_06975) | 1366260..1366451 | - | 192 | WP_004386675.1 | YebW family protein | - |
| MOQ97_RS06980 (MOQ97_06980) | 1366576..1366815 | - | 240 | WP_004386676.1 | YebV family protein | - |
| MOQ97_RS06985 (MOQ97_06985) | 1366927..1368369 | - | 1443 | WP_029464240.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T238335 NZ_CP093376:1363638-1363741 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT238335 NZ_CP093376:c1363744-1363576 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
