Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2745336..2745607 | Replicon | chromosome |
| Accession | NZ_CP093369 | ||
| Organism | Escherichia coli strain EV36 mutant 5a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2745374..2745477 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2745336..2745607 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0Q35_RS13325 | 2742493..2743932 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0Q35_RS13330 | 2744050..2744286 | + | 237 | WP_001295499.1 | YebV family protein | - |
| L0Q35_RS13335 | 2744391..2744582 | + | 192 | WP_000457842.1 | YebW family protein | - |
| L0Q35_RS13340 | 2744583..2745239 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2745336..2745607 | + | 272 | - | - | Antitoxin |
| - | 2745374..2745477 | - | 104 | - | - | Toxin |
| L0Q35_RS13345 | 2745635..2745976 | - | 342 | WP_000976476.1 | YebY family protein | - |
| L0Q35_RS13350 | 2745989..2746861 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| L0Q35_RS13355 | 2746865..2747239 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L0Q35_RS13360 | 2747378..2747608 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L0Q35_RS13365 | 2747710..2748366 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L0Q35_RS13370 | 2748390..2749052 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T238281 NZ_CP093369:c2745477-2745374 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT238281 NZ_CP093369:2745336-2745607 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
