Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5108090..5108256 | Replicon | chromosome |
| Accession | NZ_CP093334 | ||
| Organism | Raoultella planticola strain A2-F21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5108148..5108251 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5108090..5108256 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNO12_RS24335 (MNO12_24335) | 5103228..5105288 | + | 2061 | WP_094898091.1 | oligopeptidase B | - |
| MNO12_RS24340 (MNO12_24340) | 5105294..5105953 | - | 660 | WP_032686937.1 | exodeoxyribonuclease X | - |
| MNO12_RS24345 (MNO12_24345) | 5106032..5106262 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| MNO12_RS24350 (MNO12_24350) | 5106389..5106763 | + | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| MNO12_RS24355 (MNO12_24355) | 5106767..5107636 | + | 870 | WP_032686939.1 | copper homeostasis membrane protein CopD | - |
| MNO12_RS24360 (MNO12_24360) | 5107653..5107991 | + | 339 | WP_032686940.1 | YebY family protein | - |
| - | 5108090..5108256 | - | 167 | - | - | Antitoxin |
| - | 5108148..5108251 | + | 104 | - | - | Toxin |
| MNO12_RS24365 (MNO12_24365) | 5108570..5108713 | - | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| MNO12_RS24370 (MNO12_24370) | 5108834..5109805 | - | 972 | WP_179275582.1 | VirK/YbjX family protein | - |
| MNO12_RS24375 (MNO12_24375) | 5109948..5110592 | + | 645 | WP_128319464.1 | protein-serine/threonine phosphatase | - |
| MNO12_RS24380 (MNO12_24380) | 5110598..5110789 | - | 192 | WP_032686984.1 | YebW family protein | - |
| MNO12_RS24385 (MNO12_24385) | 5110883..5111122 | - | 240 | WP_004863958.1 | YebV family protein | - |
| MNO12_RS24390 (MNO12_24390) | 5111237..5112670 | - | 1434 | WP_131056043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T238182 NZ_CP093334:5108148-5108251 [Raoultella planticola]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT238182 NZ_CP093334:c5108256-5108090 [Raoultella planticola]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
