Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hipBA/HipA-couple_hipB |
| Location | 542307..544126 | Replicon | plasmid p2 |
| Accession | NZ_CP093330 | ||
| Organism | Rahnella aceris strain S2-A69 | ||
Toxin (Protein)
| Gene name | hipA | Uniprot ID | H8P0A1 |
| Locus tag | MNO10_RS24970 | Protein ID | WP_013578107.1 |
| Coordinates | 542307..543656 (+) | Length | 450 a.a. |
Antitoxin (Protein)
| Gene name | hipB | Uniprot ID | H8P0A0 |
| Locus tag | MNO10_RS24975 | Protein ID | WP_013578106.1 |
| Coordinates | 543653..544126 (+) | Length | 158 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNO10_RS24935 (MNO10_24935) | 537736..538035 | - | 300 | Protein_509 | iron dicitrate ABC transporter ATP-binding protein | - |
| MNO10_RS24940 (MNO10_24940) | 538194..538412 | - | 219 | WP_013578112.1 | YgdI/YgdR family lipoprotein | - |
| MNO10_RS24945 (MNO10_24945) | 538791..539165 | + | 375 | WP_051930969.1 | hypothetical protein | - |
| MNO10_RS24950 (MNO10_24950) | 539278..540603 | + | 1326 | WP_168444347.1 | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW | - |
| MNO10_RS24955 (MNO10_24955) | 540581..541102 | + | 522 | WP_241917389.1 | heme utilization cystosolic carrier protein HutX | - |
| MNO10_RS24960 (MNO10_24960) | 541099..541722 | + | 624 | WP_014416649.1 | NAD(P)H-binding protein | - |
| MNO10_RS24965 (MNO10_24965) | 541890..542111 | + | 222 | WP_014416648.1 | DUF1471 domain-containing protein | - |
| MNO10_RS24970 (MNO10_24970) | 542307..543656 | + | 1350 | WP_013578107.1 | HipA domain-containing protein | Toxin |
| MNO10_RS24975 (MNO10_24975) | 543653..544126 | + | 474 | WP_013578106.1 | helix-turn-helix transcriptional regulator | Antitoxin |
| MNO10_RS24980 (MNO10_24980) | 544187..544507 | - | 321 | WP_013578105.1 | multidrug efflux SMR transporter | - |
| MNO10_RS24985 (MNO10_24985) | 544623..545477 | - | 855 | WP_014416647.1 | LysR family transcriptional regulator | - |
| MNO10_RS24990 (MNO10_24990) | 545565..546278 | - | 714 | WP_112151437.1 | DUF554 domain-containing protein | - |
| MNO10_RS24995 (MNO10_24995) | 546318..546887 | - | 570 | WP_121019887.1 | UbiX family flavin prenyltransferase | - |
| MNO10_RS25000 (MNO10_25000) | 546947..548446 | - | 1500 | WP_013578103.1 | UbiD family decarboxylase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 450 a.a. Molecular weight: 51261.71 Da Isoelectric Point: 4.7025
>T238157 WP_013578107.1 NZ_CP093330:542307-543656 [Rahnella aceris]
MEFLTLQAFLNNTWVDIANITFPGSEQNNYRLTELNYHSDYAIDNLDRDDNHAASLNHPVSLFFDGDDERGWLKFLDDII
PSGSSRRYWANYLDLEGLTADQQNFILLKHGTLSPVGNLRIKESLPEYNPLAEKLFFTIEDVKNRAGDFLDYAQQRGAAA
GGATGAGGEAPKLLLRCSQEQQIWIDTYQNDTANRDIPYLVKYPRGARTEVDCNILRAEFYFYHELEAMGFDTIPTQNMR
LEEGLTYPSLWLPRFDISFEEEGLIRRFGMESVYSLLRKAPGVTLYHEETLRALIDKISHSHMVTEQGFDFDIPGFVTEW
VRRDLLNIIFGNSDNHGRNTSFLKDERSIRLAPIYDFAPMKADPEGIARTTKWKAPLEIGGEYDYPGIAQSLDDLVPAET
LLSALKNTSHQLSGLKERLEARGIPQQILNMPAISFSFIPEKLRRWGLL
MEFLTLQAFLNNTWVDIANITFPGSEQNNYRLTELNYHSDYAIDNLDRDDNHAASLNHPVSLFFDGDDERGWLKFLDDII
PSGSSRRYWANYLDLEGLTADQQNFILLKHGTLSPVGNLRIKESLPEYNPLAEKLFFTIEDVKNRAGDFLDYAQQRGAAA
GGATGAGGEAPKLLLRCSQEQQIWIDTYQNDTANRDIPYLVKYPRGARTEVDCNILRAEFYFYHELEAMGFDTIPTQNMR
LEEGLTYPSLWLPRFDISFEEEGLIRRFGMESVYSLLRKAPGVTLYHEETLRALIDKISHSHMVTEQGFDFDIPGFVTEW
VRRDLLNIIFGNSDNHGRNTSFLKDERSIRLAPIYDFAPMKADPEGIARTTKWKAPLEIGGEYDYPGIAQSLDDLVPAET
LLSALKNTSHQLSGLKERLEARGIPQQILNMPAISFSFIPEKLRRWGLL
Download Length: 1350 bp
>T238157 NZ_LR890240:1886593-1886695 [Klebsiella pneumoniae]
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 158 a.a. Molecular weight: 17587.18 Da Isoelectric Point: 10.9653
>AT238157 WP_013578106.1 NZ_CP093330:543653-544126 [Rahnella aceris]
MKEPEIAANSARNTIDKIRAKQNEANHVRRDAGQMLAQEETSSTGKKQAQRRVSNLTKPVSTNDRNQARLDIMRALLLGE
ITQGQALKALRITVLGLKQDAFGKLVTVSRKTLSEVENDKGNYTPDIINKLFRPFGLKVGLVPVSQQIFRTLFERSE
MKEPEIAANSARNTIDKIRAKQNEANHVRRDAGQMLAQEETSSTGKKQAQRRVSNLTKPVSTNDRNQARLDIMRALLLGE
ITQGQALKALRITVLGLKQDAFGKLVTVSRKTLSEVENDKGNYTPDIINKLFRPFGLKVGLVPVSQQIFRTLFERSE
Download Length: 474 bp
>AT238157 NZ_LR890240:c1886702-1886557 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|