Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 626176..626265 Replicon chromosome
Accession NZ_CP093328
Organism Rahnella aceris strain S2-A69

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 626176..626265 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 626176..626265 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MNO10_RS03005 (MNO10_03005) 622102..623058 + 957 WP_013576178.1 prolyl aminopeptidase -
MNO10_RS03010 (MNO10_03010) 623078..623308 - 231 WP_013576177.1 DNA polymerase III subunit theta -
MNO10_RS03015 (MNO10_03015) 623715..624221 + 507 WP_013576176.1 non-heme ferritin -
MNO10_RS03020 (MNO10_03020) 624395..624745 + 351 WP_241917259.1 copper homeostasis periplasmic binding protein CopC -
MNO10_RS03025 (MNO10_03025) 624749..625633 + 885 WP_037037430.1 copper homeostasis membrane protein CopD -
MNO10_RS03030 (MNO10_03030) 625685..626020 + 336 WP_013576173.1 YebY family protein -
- 626176..626265 + 90 - - Toxin
MNO10_RS03035 (MNO10_03035) 626355..626507 - 153 WP_072012305.1 tyrosine-type recombinase/integrase -
MNO10_RS03040 (MNO10_03040) 627173..628084 + 912 WP_241917056.1 cation diffusion facilitator family transporter -
MNO10_RS03045 (MNO10_03045) 628285..628959 - 675 WP_240970758.1 hypothetical protein -
MNO10_RS03050 (MNO10_03050) 629132..631111 - 1980 WP_119261799.1 alkyl sulfatase dimerization domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 90 bp

>T238142 NZ_CP093328:626176-626265 [Rahnella aceris]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin


Download         Length: 90 bp

>AT238142 NZ_CP093328:c626265-626176 [Rahnella aceris]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References