Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2168577..2168664 | Replicon | chromosome |
| Accession | NZ_CP093322 | ||
| Organism | Yersinia intermedia strain N6/293 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2168577..2168660 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2168577..2168664 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNQ97_RS09760 (MNQ97_09760) | 2164152..2165108 | + | 957 | WP_050085883.1 | prolyl aminopeptidase | - |
| MNQ97_RS09765 (MNQ97_09765) | 2165169..2165399 | - | 231 | WP_050085884.1 | DNA polymerase III subunit theta | - |
| MNQ97_RS09770 (MNQ97_09770) | 2165790..2166293 | + | 504 | WP_005183013.1 | non-heme ferritin | - |
| MNQ97_RS09775 (MNQ97_09775) | 2166681..2167067 | + | 387 | WP_005183010.1 | CopC domain-containing protein YobA | - |
| MNQ97_RS09780 (MNQ97_09780) | 2167069..2167953 | + | 885 | WP_241916370.1 | copper homeostasis membrane protein CopD | - |
| MNQ97_RS09785 (MNQ97_09785) | 2168050..2168391 | + | 342 | WP_050085886.1 | YebY family protein | - |
| - | 2168577..2168660 | + | 84 | - | - | Toxin |
| - | 2168577..2168664 | - | 88 | - | - | Antitoxin |
| MNQ97_RS09790 (MNQ97_09790) | 2168736..2169845 | - | 1110 | WP_241916371.1 | tyrosine-type recombinase/integrase | - |
| MNQ97_RS09795 (MNQ97_09795) | 2169820..2170089 | - | 270 | WP_049688719.1 | excisionase | - |
| MNQ97_RS09800 (MNQ97_09800) | 2170323..2170673 | - | 351 | WP_050915414.1 | hypothetical protein | - |
| MNQ97_RS09805 (MNQ97_09805) | 2170956..2171648 | - | 693 | WP_050915415.1 | hypothetical protein | - |
| MNQ97_RS09810 (MNQ97_09810) | 2171928..2172452 | - | 525 | WP_241916372.1 | hypothetical protein | - |
| MNQ97_RS09815 (MNQ97_09815) | 2172452..2172931 | - | 480 | WP_050297383.1 | hypothetical protein | - |
| MNQ97_RS09820 (MNQ97_09820) | 2172928..2173164 | - | 237 | WP_038243357.1 | hypothetical protein | - |
| MNQ97_RS09825 (MNQ97_09825) | 2173161..2173496 | - | 336 | WP_241916373.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2162970..2232469 | 69499 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 bp
>T238108 NZ_CP093322:2168577-2168660 [Yersinia intermedia]
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTCT
TTTT
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTCT
TTTT
Antitoxin
Download Length: 88 bp
>AT238108 NZ_CP093322:c2168664-2168577 [Yersinia intermedia]
AGATAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAAGTTG
GCATTAAT
AGATAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAAGTTG
GCATTAAT
