Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1926388..1926659 | Replicon | chromosome |
| Accession | NZ_CP093317 | ||
| Organism | Escherichia coli strain HUM3355 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1926518..1926621 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1926388..1926659 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MLA23_RS09060 | 1922943..1923605 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MLA23_RS09065 | 1923629..1924285 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MLA23_RS09070 | 1924387..1924617 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MLA23_RS09075 | 1924756..1925130 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MLA23_RS09080 | 1925134..1926006 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| MLA23_RS09085 | 1926019..1926360 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1926388..1926659 | - | 272 | - | - | Antitoxin |
| - | 1926518..1926621 | + | 104 | - | - | Toxin |
| MLA23_RS09090 | 1926756..1927412 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| MLA23_RS09095 | 1927413..1927604 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MLA23_RS09100 | 1927709..1927945 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MLA23_RS09105 | 1928063..1929502 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T238074 NZ_CP093317:1926518-1926621 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT238074 NZ_CP093317:c1926659-1926388 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
