Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2277782..2277926 | Replicon | chromosome |
| Accession | NZ_CP093276 | ||
| Organism | Raoultella sp. HC6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2277817..2277920 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2277782..2277926 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MMW58_RS11090 | 2272894..2274954 | + | 2061 | WP_241723362.1 | oligopeptidase B | - |
| MMW58_RS11095 | 2274963..2275622 | - | 660 | WP_041146220.1 | exodeoxyribonuclease X | - |
| MMW58_RS11100 | 2275701..2275931 | - | 231 | WP_133598511.1 | DNA polymerase III subunit theta | - |
| MMW58_RS11105 | 2276058..2276432 | + | 375 | WP_133598509.1 | CopC domain-containing protein YobA | - |
| MMW58_RS11110 | 2276436..2277305 | + | 870 | WP_159235711.1 | copper homeostasis membrane protein CopD | - |
| MMW58_RS11115 | 2277322..2277660 | + | 339 | WP_241723363.1 | YebY family protein | - |
| - | 2277782..2277926 | - | 145 | - | - | Antitoxin |
| - | 2277817..2277920 | + | 104 | - | - | Toxin |
| MMW58_RS11120 | 2278297..2278440 | - | 144 | WP_148070661.1 | Ecr family regulatory small membrane protein | - |
| MMW58_RS11125 | 2278546..2279505 | - | 960 | WP_241723364.1 | VirK/YbjX family protein | - |
| MMW58_RS11130 | 2279669..2280322 | + | 654 | WP_133598495.1 | protein-serine/threonine phosphatase | - |
| MMW58_RS11135 | 2280319..2280510 | - | 192 | WP_133598493.1 | YebW family protein | - |
| MMW58_RS11140 | 2280609..2280848 | - | 240 | WP_045859185.1 | YebV family protein | - |
| MMW58_RS11145 | 2280964..2282397 | - | 1434 | WP_241723365.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237971 NZ_CP093276:2277817-2277920 [Raoultella sp. HC6]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT237971 NZ_CP093276:c2277926-2277782 [Raoultella sp. HC6]
ACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGT
