Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2089966..2090211 | Replicon | chromosome |
| Accession | NZ_CP093239 | ||
| Organism | Escherichia marmotae strain W49-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2090094..2090197 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2089966..2090211 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNY74_RS09715 | 2086519..2087181 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| MNY74_RS09720 | 2087206..2087862 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MNY74_RS09725 | 2087963..2088193 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| MNY74_RS09730 | 2088332..2088706 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| MNY74_RS09735 | 2088710..2089582 | + | 873 | WP_181479177.1 | copper homeostasis membrane protein CopD | - |
| MNY74_RS09740 | 2089595..2089936 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 2089966..2090211 | - | 246 | - | - | Antitoxin |
| - | 2090094..2090197 | + | 104 | - | - | Toxin |
| MNY74_RS09745 | 2090346..2091002 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| MNY74_RS09750 | 2091003..2091194 | - | 192 | WP_001516263.1 | YebW family protein | - |
| MNY74_RS09755 | 2091299..2091535 | - | 237 | WP_001516264.1 | YebV family protein | - |
| MNY74_RS09760 | 2091651..2093090 | - | 1440 | WP_181479178.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237899 NZ_CP093239:2090094-2090197 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT237899 NZ_CP093239:c2090211-2089966 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
