Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2044929..2045200 | Replicon | chromosome |
| Accession | NZ_CP093226 | ||
| Organism | Escherichia coli strain EC-16-35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2045059..2045162 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2044929..2045200 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNY24_RS09775 | 2041484..2042146 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MNY24_RS09780 | 2042170..2042826 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MNY24_RS09785 | 2042928..2043158 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MNY24_RS09790 | 2043297..2043671 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MNY24_RS09795 | 2043675..2044547 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| MNY24_RS09800 | 2044560..2044901 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2044929..2045200 | - | 272 | - | - | Antitoxin |
| - | 2045059..2045162 | + | 104 | - | - | Toxin |
| MNY24_RS09805 | 2045297..2045953 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| MNY24_RS09810 | 2045954..2046145 | - | 192 | WP_000457842.1 | YebW family protein | - |
| MNY24_RS09815 | 2046250..2046486 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MNY24_RS09820 | 2046604..2048043 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237858 NZ_CP093226:2045059-2045162 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT237858 NZ_CP093226:c2045200-2044929 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
