Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3077258..3077529 | Replicon | chromosome |
| Accession | NZ_CP093221 | ||
| Organism | Escherichia coli strain ER2683 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3077388..3077491 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3077258..3077529 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNV48_RS14790 | 3073813..3074475 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MNV48_RS14795 | 3074499..3075155 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MNV48_RS14800 | 3075257..3075487 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MNV48_RS14805 | 3075626..3076000 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MNV48_RS14810 | 3076004..3076876 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| MNV48_RS14815 | 3076889..3077230 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3077258..3077529 | - | 272 | - | - | Antitoxin |
| - | 3077388..3077491 | + | 104 | - | - | Toxin |
| MNV48_RS14820 | 3077626..3078282 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| MNV48_RS14825 | 3078283..3078474 | - | 192 | WP_000457842.1 | YebW family protein | - |
| MNV48_RS14830 | 3078579..3078815 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MNV48_RS14835 | 3078933..3080372 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237833 NZ_CP093221:3077388-3077491 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT237833 NZ_CP093221:c3077529-3077258 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
