Detailed information of TA system TA237810

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/YafQ-DinJ
• Location: 1000684..1001245
• Replicon: chromosome
• Accession: NZ_CP093215
• Organism: Mycoplasma mycoides subsp. capri strain HN-A

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: MNF30_RS04185
• Protein ID: WP_265510446.1
• Coordinates: 1000684..1000980 (-)
• Length: 99 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: MNF30_RS04190
• Protein ID: WP_265510447.1
• Coordinates: 1000973..1001245 (-)
• Length: 91 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MNF30_RS04170 (MNF30_04165)	996357..997635	+	1279	Protein_796	IS3 family transposase	-
MNF30_RS04175 (MNF30_04170)	997741..999348	+	1608	WP_265510444.1	LppA family lipoprotein	-
MNF30_RS04180 (MNF30_04175)	999385..1000266	-	882	WP_265510445.1	Cof-type HAD-IIB family hydrolase	-
MNF30_RS04185 (MNF30_04180)	1000684..1000980	-	297	WP_265510446.1	type II toxin-antitoxin system YafQ family toxin	Toxin
MNF30_RS04190 (MNF30_04185)	1000973..1001245	-	273	WP_265510447.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	Antitoxin
MNF30_RS04195 (MNF30_04190)	1001521..1002030	-	510	WP_265510448.1	hypothetical protein	-
MNF30_RS04200 (MNF30_04195)	1002295..1002393	-	99	WP_265510449.1	BspA family leucine-rich repeat surface protein	-
MNF30_RS04205 (MNF30_04200)	1002831..1005923	-	3093	WP_265510450.1	ABC transporter substrate-binding protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, YafQ-like toxin (3-90)

Antitoxin

• RelB antitoxin/Antitoxin DinJ (1-87)

Sequences

Toxin

Protein

• Length: 99 a.a.
• Molecular weight: 11424.33 Da
• Isoelectric Point: 10.0664

>T237810 WP_265510446.1 NZ_CP093215:c1000980-1000684 [Mycoplasma mycoides subsp. capri]
MTKYKIVTTKFKKDLKLAKKQNKDLNKLDYVINILTQGKELDAKYRDHSLTGIYKGYRECHIDPDLLIYKKDDDKIVITM
LRLGSHSNLFEKQRNY

Nucleotide

• Length: 297 bp

>T237810 NZ_LR882967:c2273603-2273217 [Planktothrix pseudagardhii]
ATGAATTCTTTTCTGTTAGATACTCATACTTTTATTTGGTTATCGGAAAATGATCCTAATTTACCTGATAGCCTAAGAGA
GATGATTGATATAGCGGATCATGTTTATCTGAGTATTGCCAGTCTTTGGGAAATTGCGATTAAGTTAAATTTGGGTAAAT
TGTCATTACAACAAAGTTATAAAACCATTGAAGATAAGCTTGAAAATTCAGATATTCTTTTGCTCCCTATTATGTTTATT
GATACGTTACAAATTTGTAATCTACCCTTACATCATCGAGATCCTTTTGATCGAATGTTAATCGCTCAAGCCATCAATAG
ATCCCTAATTTTAATTAGCAGAGATATCAAGTTTGATGCTTATCCTATTCAGAGATTATGGGATTAA

Antitoxin

Protein

• Length: 91 a.a.
• Molecular weight: 10233.69 Da
• Isoelectric Point: 4.6437

>AT237810 WP_265510447.1 NZ_CP093215:c1001245-1000973 [Mycoplasma mycoides subsp. capri]
MKTTNLNVRIDKEVKLDAEAIFNELGLSTSAAINMFFKATIRNNSLPFSTKLDTPNKETLLAMKEAEELLKDPNTKYYSS
FKELLETLDD

Nucleotide

• Length: 273 bp

>AT237810 NZ_LR882967:c2273830-2273600 [Planktothrix pseudagardhii]
ATGAATATTGATACGGAAATCCTACAAATGGTTGGGATAATGCCAGAATCTCTAAAACAAGAGCTTCTACATTATGCTAA
CTATCTTATGGAAAACTACTCCCAAAAGACTCCCTCAGAGCAGCCCCCTGTTAAAAAACGTCGCTCAGGAATATTACAAG
GGACTTTTGTTTTACCTCTATCTGATGATTTTGATGAACCTTTAGAAGATTTTAAGGAATATATGGAATGA