Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/HTH_10(toxin) |
| Location | 836845..837818 | Replicon | chromosome |
| Accession | NC_012622 | ||
| Organism | Sulfolobus islandicus Y.G.57.14 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | C3MNP7 |
| Locus tag | YG5714_RS04370 | Protein ID | WP_012713380.1 |
| Coordinates | 837207..837818 (+) | Length | 204 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | C3NCU4 |
| Locus tag | YG5714_RS04365 | Protein ID | WP_012715950.1 |
| Coordinates | 836845..837189 (+) | Length | 115 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YG5714_RS04330 | 832074..832235 | - | 162 | WP_238526238.1 | hypothetical protein | - |
| YG5714_RS04335 (YG5714_0891) | 832329..834329 | + | 2001 | WP_012715946.1 | DEAD/DEAH box helicase | - |
| YG5714_RS04340 (YG5714_0892) | 834291..835115 | - | 825 | WP_012715947.1 | DMT family transporter | - |
| YG5714_RS04345 (YG5714_0893) | 835135..835359 | - | 225 | WP_012715948.1 | hypothetical protein | - |
| YG5714_RS14945 (YG5714_0894) | 835624..836410 | - | 787 | Protein_907 | IS630 family transposase | - |
| YG5714_RS04365 (YG5714_0895) | 836845..837189 | + | 345 | WP_012715950.1 | DUF488 domain-containing protein | Antitoxin |
| YG5714_RS04370 (YG5714_0896) | 837207..837818 | + | 612 | WP_012713380.1 | helix-turn-helix domain-containing protein | Toxin |
| YG5714_RS04375 (YG5714_0897) | 838016..839194 | + | 1179 | WP_012715951.1 | amidohydrolase family protein | - |
| YG5714_RS04380 (YG5714_0898) | 839303..841123 | + | 1821 | WP_012715952.1 | 4Fe-4S binding protein | - |
| YG5714_RS04385 (YG5714_0899) | 841195..842382 | - | 1188 | WP_012715953.1 | FtsX-like permease family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 836116..836310 | 194 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 204 a.a. Molecular weight: 23124.12 Da Isoelectric Point: 8.9687
>T23763 WP_012713380.1 NC_012622:837207-837818 [Sulfolobus islandicus Y.G.57.14]
MYRSPFEVTLLIEDHPCEVMKIISLTGLKASVENVKLGEQTTDHIVSFEKEIEKSEVLKLKSNSVKVLKLSETKVWVRTN
GCVVCRILYTSDVVVEKIKVLKERTLLYTLLVPNSSSFKEFLTKLSKEGVKVTVLNVSEISSAELTERQMEILQLAYKLG
YFNDDRGITLSQLADKLGISAPTLEEILRRALRKVVKYYLDKH
MYRSPFEVTLLIEDHPCEVMKIISLTGLKASVENVKLGEQTTDHIVSFEKEIEKSEVLKLKSNSVKVLKLSETKVWVRTN
GCVVCRILYTSDVVVEKIKVLKERTLLYTLLVPNSSSFKEFLTKLSKEGVKVTVLNVSEISSAELTERQMEILQLAYKLG
YFNDDRGITLSQLADKLGISAPTLEEILRRALRKVVKYYLDKH
Download Length: 612 bp
>T23763 NC_012622:837207-837818 [Sulfolobus islandicus Y.G.57.14]
ATGTATAGATCTCCCTTTGAAGTAACATTACTAATAGAGGATCACCCTTGTGAAGTAATGAAAATAATATCATTAACGGG
ACTTAAAGCAAGTGTGGAAAACGTTAAGTTAGGAGAACAGACTACGGATCATATAGTTAGTTTCGAAAAGGAGATAGAGA
AGAGTGAAGTTCTAAAATTAAAGTCAAATAGCGTTAAAGTGCTAAAACTCAGTGAAACTAAAGTATGGGTGAGAACTAAT
GGATGTGTGGTATGCAGGATACTTTATACTTCTGATGTAGTTGTAGAGAAAATTAAAGTACTAAAAGAGAGGACTTTACT
TTATACTTTACTTGTACCTAATAGCTCATCGTTTAAGGAATTTTTAACCAAATTATCGAAAGAAGGAGTAAAAGTAACAG
TTTTAAACGTCTCAGAGATATCTAGTGCGGAACTTACTGAGAGGCAGATGGAAATACTACAATTAGCCTATAAGTTAGGT
TATTTTAATGATGATAGGGGTATTACATTATCTCAGCTAGCAGATAAATTGGGAATAAGTGCGCCAACTCTGGAAGAGAT
ATTAAGGAGAGCTCTTAGAAAAGTTGTAAAGTATTATTTGGATAAGCATTAA
ATGTATAGATCTCCCTTTGAAGTAACATTACTAATAGAGGATCACCCTTGTGAAGTAATGAAAATAATATCATTAACGGG
ACTTAAAGCAAGTGTGGAAAACGTTAAGTTAGGAGAACAGACTACGGATCATATAGTTAGTTTCGAAAAGGAGATAGAGA
AGAGTGAAGTTCTAAAATTAAAGTCAAATAGCGTTAAAGTGCTAAAACTCAGTGAAACTAAAGTATGGGTGAGAACTAAT
GGATGTGTGGTATGCAGGATACTTTATACTTCTGATGTAGTTGTAGAGAAAATTAAAGTACTAAAAGAGAGGACTTTACT
TTATACTTTACTTGTACCTAATAGCTCATCGTTTAAGGAATTTTTAACCAAATTATCGAAAGAAGGAGTAAAAGTAACAG
TTTTAAACGTCTCAGAGATATCTAGTGCGGAACTTACTGAGAGGCAGATGGAAATACTACAATTAGCCTATAAGTTAGGT
TATTTTAATGATGATAGGGGTATTACATTATCTCAGCTAGCAGATAAATTGGGAATAAGTGCGCCAACTCTGGAAGAGAT
ATTAAGGAGAGCTCTTAGAAAAGTTGTAAAGTATTATTTGGATAAGCATTAA
Antitoxin
Download Length: 115 a.a. Molecular weight: 13697.97 Da Isoelectric Point: 9.9999
>AT23763 WP_012715950.1 NC_012622:836845-837189 [Sulfolobus islandicus Y.G.57.14]
MIKVKRVYDPLEKDDGIRILVDRLWPRGVKKDQVDVWLKDIAPSDELRKWYNHDPNKWEEFKRKYFEELNRNPKVEILLQ
LIKKGNNVTLLYASKSPYNNAVALKEYLEKVLKV
MIKVKRVYDPLEKDDGIRILVDRLWPRGVKKDQVDVWLKDIAPSDELRKWYNHDPNKWEEFKRKYFEELNRNPKVEILLQ
LIKKGNNVTLLYASKSPYNNAVALKEYLEKVLKV
Download Length: 345 bp
>AT23763 NC_012622:836845-837189 [Sulfolobus islandicus Y.G.57.14]
ATGATAAAAGTTAAGAGAGTTTACGATCCTTTAGAAAAGGATGATGGAATTAGGATTTTAGTAGACAGATTATGGCCTAG
AGGTGTTAAGAAGGATCAAGTAGACGTTTGGCTTAAGGACATAGCACCTAGTGATGAACTAAGGAAATGGTATAATCACG
ATCCTAACAAATGGGAGGAGTTTAAAAGGAAGTACTTTGAGGAACTCAATAGAAATCCTAAGGTTGAAATACTCTTACAG
TTAATTAAAAAGGGGAATAATGTAACCTTACTTTATGCCTCAAAATCTCCATATAATAATGCGGTGGCATTAAAAGAGTA
TTTAGAGAAGGTATTAAAGGTTTGA
ATGATAAAAGTTAAGAGAGTTTACGATCCTTTAGAAAAGGATGATGGAATTAGGATTTTAGTAGACAGATTATGGCCTAG
AGGTGTTAAGAAGGATCAAGTAGACGTTTGGCTTAAGGACATAGCACCTAGTGATGAACTAAGGAAATGGTATAATCACG
ATCCTAACAAATGGGAGGAGTTTAAAAGGAAGTACTTTGAGGAACTCAATAGAAATCCTAAGGTTGAAATACTCTTACAG
TTAATTAAAAAGGGGAATAATGTAACCTTACTTTATGCCTCAAAATCTCCATATAATAATGCGGTGGCATTAAAAGAGTA
TTTAGAGAAGGTATTAAAGGTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|