Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2289115..2289283 | Replicon | chromosome |
| Accession | NZ_CP093010 | ||
| Organism | Klebsiella michiganensis strain K342 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2289173..2289276 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2289115..2289283 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MMY94_RS11105 (MMY94_11105) | 2284242..2286302 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| MMY94_RS11110 (MMY94_11110) | 2286309..2286968 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| MMY94_RS11115 (MMY94_11115) | 2287047..2287277 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| MMY94_RS11120 (MMY94_11120) | 2287413..2287787 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| MMY94_RS11125 (MMY94_11125) | 2287792..2288661 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| MMY94_RS11130 (MMY94_11130) | 2288678..2289016 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2289115..2289283 | - | 169 | - | - | Antitoxin |
| - | 2289173..2289276 | + | 104 | - | - | Toxin |
| MMY94_RS11135 (MMY94_11135) | 2289401..2290360 | - | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| MMY94_RS11140 (MMY94_11140) | 2290375..2292705 | - | 2331 | WP_032694917.1 | fimbria/pilus outer membrane usher protein | - |
| MMY94_RS11145 (MMY94_11145) | 2292708..2293472 | - | 765 | WP_032694916.1 | fimbria/pilus periplasmic chaperone | - |
| MMY94_RS11150 (MMY94_11150) | 2293491..2294009 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237478 NZ_CP093010:2289173-2289276 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT237478 NZ_CP093010:c2289283-2289115 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
