Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2514883..2515026 | Replicon | chromosome |
| Accession | NZ_CP092911 | ||
| Organism | Salmonella enterica subsp. enterica strain SR33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2514885..2514988 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2514883..2515026 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MLD58_RS12285 | 2510315..2510584 | + | 270 | WP_077908593.1 | hypothetical protein | - |
| MLD58_RS12290 | 2510750..2510890 | + | 141 | WP_001576018.1 | hypothetical protein | - |
| MLD58_RS12295 | 2511036..2511577 | - | 542 | Protein_2405 | transposase | - |
| MLD58_RS12300 | 2511597..2511689 | - | 93 | WP_231923105.1 | hypothetical protein | - |
| MLD58_RS12305 | 2511719..2514139 | - | 2421 | WP_024149295.1 | type III secretion system effector SspH3 | - |
| MLD58_RS12310 | 2514312..2514395 | - | 84 | Protein_2408 | phage tail protein | - |
| MLD58_RS12315 | 2514407..2514754 | + | 348 | Protein_2409 | tyrosine-type recombinase/integrase | - |
| - | 2514883..2515026 | + | 144 | - | - | Antitoxin |
| - | 2514885..2514988 | - | 104 | - | - | Toxin |
| MLD58_RS12320 | 2515128..2515481 | - | 354 | WP_000722368.1 | YebY family protein | - |
| MLD58_RS12325 | 2515498..2516373 | - | 876 | WP_023137953.1 | copper homeostasis membrane protein CopD | - |
| MLD58_RS12330 | 2516374..2516748 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| MLD58_RS12335 | 2516886..2517116 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| MLD58_RS12340 | 2517224..2517880 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| MLD58_RS12345 | 2517904..2518602 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237395 NZ_CP092911:c2514988-2514885 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT237395 NZ_CP092911:2514883-2515026 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
