Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3042861..3043001 | Replicon | chromosome |
| Accession | NZ_CP092860 | ||
| Organism | Citrobacter braakii strain P1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3042863..3042966 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3042861..3043001 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ613_RS15115 (MJ613_15100) | 3038059..3039354 | + | 1296 | WP_185654380.1 | voltage-gated chloride channel family protein | - |
| MJ613_RS15120 (MJ613_15105) | 3039296..3039607 | - | 312 | WP_185654379.1 | DNA cytosine methyltransferase | - |
| MJ613_RS15125 (MJ613_15110) | 3040114..3041112 | + | 999 | WP_185654378.1 | RecT family recombinase | - |
| MJ613_RS15130 (MJ613_15115) | 3041152..3041394 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| MJ613_RS15135 (MJ613_15120) | 3041459..3041731 | + | 273 | WP_072034353.1 | excisionase | - |
| MJ613_RS15140 (MJ613_15125) | 3041700..3042785 | + | 1086 | WP_047415377.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3042861..3043001 | + | 141 | - | - | Antitoxin |
| - | 3042863..3042966 | - | 104 | - | - | Toxin |
| MJ613_RS15145 (MJ613_15130) | 3043122..3043460 | - | 339 | WP_003833793.1 | YebY family protein | - |
| MJ613_RS15150 (MJ613_15135) | 3043481..3044353 | - | 873 | WP_137351950.1 | copper homeostasis membrane protein CopD | - |
| MJ613_RS15155 (MJ613_15140) | 3044357..3044731 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| MJ613_RS15160 (MJ613_15145) | 3044875..3045105 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| MJ613_RS15165 (MJ613_15150) | 3045212..3045868 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| MJ613_RS15170 (MJ613_15155) | 3045892..3046554 | + | 663 | WP_049040232.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237288 NZ_CP092860:c3042966-3042863 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT237288 NZ_CP092860:3042861-3043001 [Citrobacter braakii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
