Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | pemIK/MazF-doc |
| Location | 10192..10775 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP092858 | ||
| Organism | Staphylococcus capitis strain LR 95 | ||
Toxin (Protein)
| Gene name | pemK | Uniprot ID | A0A507SRD9 |
| Locus tag | MMG96_RS12730 | Protein ID | WP_030064695.1 |
| Coordinates | 10437..10775 (+) | Length | 113 a.a. |
Antitoxin (Protein)
| Gene name | pemI | Uniprot ID | - |
| Locus tag | MMG96_RS12725 | Protein ID | WP_030064697.1 |
| Coordinates | 10192..10440 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MMG96_RS12690 (MMG96_12690) | 6529..6639 | + | 111 | WP_080550853.1 | SE2200 family small protein | - |
| MMG96_RS12695 (MMG96_12695) | 6871..7005 | + | 135 | WP_002436888.1 | beta-class phenol-soluble modulin | - |
| MMG96_RS12700 (MMG96_12700) | 7274..7960 | - | 687 | WP_030063663.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| MMG96_RS12705 (MMG96_12705) | 8083..8445 | + | 363 | WP_080707422.1 | hypothetical protein | - |
| MMG96_RS12710 (MMG96_12710) | 8865..9071 | - | 207 | Protein_10 | IS6 family transposase | - |
| MMG96_RS12715 (MMG96_12715) | 9157..9249 | + | 93 | WP_023016171.1 | type I toxin-antitoxin system Fst family toxin | - |
| MMG96_RS13020 | 9673..9795 | + | 123 | WP_258526432.1 | hypothetical protein | - |
| MMG96_RS12720 (MMG96_12720) | 9802..10029 | + | 228 | WP_030064699.1 | hypothetical protein | - |
| MMG96_RS12725 (MMG96_12725) | 10192..10440 | + | 249 | WP_030064697.1 | hypothetical protein | Antitoxin |
| MMG96_RS12730 (MMG96_12730) | 10437..10775 | + | 339 | WP_030064695.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin |
| MMG96_RS12735 (MMG96_12735) | 11425..11910 | + | 486 | WP_002469635.1 | hypothetical protein | - |
| MMG96_RS12740 (MMG96_12740) | 12028..12588 | - | 561 | WP_030064977.1 | TIGR00730 family Rossman fold protein | - |
| MMG96_RS12745 (MMG96_12745) | 12795..12890 | + | 96 | WP_000889979.1 | type I toxin-antitoxin system Fst family toxin | - |
| MMG96_RS12750 (MMG96_12750) | 13087..13353 | + | 267 | Protein_19 | replication initiation protein | - |
| MMG96_RS12755 (MMG96_12755) | 14017..14622 | - | 606 | WP_037582495.1 | stage II sporulation protein M | - |
| MMG96_RS12760 (MMG96_12760) | 14702..14788 | - | 87 | Protein_21 | IS6 family transposase | - |
| MMG96_RS12765 (MMG96_12765) | 14773..14841 | - | 69 | Protein_22 | IS6 family transposase | - |
| MMG96_RS12770 (MMG96_12770) | 15034..15372 | - | 339 | WP_030065368.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| MMG96_RS12775 (MMG96_12775) | 15369..15617 | - | 249 | WP_002442045.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | blaZ | - | 1..31876 | 31876 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 113 a.a. Molecular weight: 13051.08 Da Isoelectric Point: 8.8911
>T237283 WP_030064695.1 NZ_CP092858:10437-10775 [Staphylococcus capitis]
MSIKQFDILYIDLDPTRGRKKQKIRLCLVVNNQMTINGTDFVWILPITSREVRFPTDIEVKTKNGLVTGVIDTIQIRSLD
LNARYHNYKDELQDNLKNDVIQSIQTYINPTL
MSIKQFDILYIDLDPTRGRKKQKIRLCLVVNNQMTINGTDFVWILPITSREVRFPTDIEVKTKNGLVTGVIDTIQIRSLD
LNARYHNYKDELQDNLKNDVIQSIQTYINPTL
Download Length: 339 bp
>T237283 NZ_LR878365:848754-849161 [Shigella flexneri 3a]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCGCTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTATTTGATTGCG
TTCGCAGCCAGCGGTGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCGCTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTATTTGATTGCG
TTCGCAGCCAGCGGTGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9249.37 Da Isoelectric Point: 4.7049
>AT237283 WP_030064697.1 NZ_CP092858:10192-10440 [Staphylococcus capitis]
INKTSERIFKSGNSKAISLSKQTIQLADFEVGDKVEVQEMNGGLFIKKKEESIEDKITNFFKNGGKYTEEEIDFGESVGR
EI
INKTSERIFKSGNSKAISLSKQTIQLADFEVGDKVEVQEMNGGLFIKKKEESIEDKITNFFKNGGKYTEEEIDFGESVGR
EI
Download Length: 249 bp
>AT237283 NZ_LR878365:848507-848773 [Shigella flexneri 3a]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATAATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATAATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|