Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapC-vagC/VapC-VagC |
| Location | 178145..178782 | Replicon | chromosome |
| Accession | NZ_CP092851 | ||
| Organism | Burkholderia contaminans strain B17-01563-1 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | A0A228K4S8 |
| Locus tag | MMB18_RS00740 | Protein ID | WP_039351354.1 |
| Coordinates | 178381..178782 (+) | Length | 134 a.a. |
Antitoxin (Protein)
| Gene name | vagC | Uniprot ID | A0A1E3FXY0 |
| Locus tag | MMB18_RS00735 | Protein ID | WP_039351357.1 |
| Coordinates | 178145..178381 (+) | Length | 79 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MMB18_RS00720 (MMB18_00720) | 173838..174869 | + | 1032 | WP_039351365.1 | helix-turn-helix domain-containing protein | - |
| MMB18_RS00725 (MMB18_00725) | 174987..176084 | - | 1098 | WP_039351363.1 | ADP-heptose--LPS heptosyltransferase | - |
| MMB18_RS00730 (MMB18_00730) | 176081..177784 | - | 1704 | WP_241131866.1 | thiamine pyrophosphate-binding protein | - |
| MMB18_RS00735 (MMB18_00735) | 178145..178381 | + | 237 | WP_039351357.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
| MMB18_RS00740 (MMB18_00740) | 178381..178782 | + | 402 | WP_039351354.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| MMB18_RS00745 (MMB18_00745) | 178853..180241 | - | 1389 | WP_039351351.1 | L-serine ammonia-lyase | - |
| MMB18_RS00750 (MMB18_00750) | 180272..181375 | - | 1104 | WP_223274380.1 | alginate lyase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 14880.98 Da Isoelectric Point: 4.7249
>T237264 WP_039351354.1 NZ_CP092851:178381-178782 [Burkholderia contaminans]
MPRYMLDTNMCIYLMKNQPEQVARRFAQCYTGDVVMSAITYAELEYGVAACASPARERGNLAALIDDIPVAPFDVAAAQA
YGPVREATRERKKDHLDKLIAAHAVSLDVVLVTNNERDFVSYPGLRLENWLDD
MPRYMLDTNMCIYLMKNQPEQVARRFAQCYTGDVVMSAITYAELEYGVAACASPARERGNLAALIDDIPVAPFDVAAAQA
YGPVREATRERKKDHLDKLIAAHAVSLDVVLVTNNERDFVSYPGLRLENWLDD
Download Length: 402 bp
>T237264 NZ_LR828257:1275883-1276035 [Xanthomonas hortorum pv. vitians]
ATGAAGCGACTGCTGACACTGATGGTGCTAGGCCTGTTTTCGGCTGGCGTGATGACTGGCTGCAACACCATGGCCGGCGC
CGGCAAGGACATGCAGGGCGCAGGTGAGAAGGTCGAAAAGAAGGCCGATAATTGCAGCGACGGCAAGTGCTGA
ATGAAGCGACTGCTGACACTGATGGTGCTAGGCCTGTTTTCGGCTGGCGTGATGACTGGCTGCAACACCATGGCCGGCGC
CGGCAAGGACATGCAGGGCGCAGGTGAGAAGGTCGAAAAGAAGGCCGATAATTGCAGCGACGGCAAGTGCTGA
Antitoxin
Download Length: 79 a.a. Molecular weight: 9008.13 Da Isoelectric Point: 6.4720
>AT237264 WP_039351357.1 NZ_CP092851:178145-178381 [Burkholderia contaminans]
MHTTRVFRNGNSQAVRIPADLAYERSDIELEIERIGDEIRIRPARRPLTRVLEKFAKFGPDFMADGRGDHEQADREGL
MHTTRVFRNGNSQAVRIPADLAYERSDIELEIERIGDEIRIRPARRPLTRVLEKFAKFGPDFMADGRGDHEQADREGL
Download Length: 237 bp
>AT237264 NZ_LR828257:1276114-1276248 [Xanthomonas hortorum pv. vitians]
ATGAAGCGTGCAATTATACTGCTGGTGCTGTCGGTGTTTTCGGTCGGTATGCTGGCGGGTTGCAACACCGTCGCAGGTGC
TGGCAAGGACGTGCAGGGCGCTGGCGAGAAAGTGGAAGACGCTGCGCGCAAGTGA
ATGAAGCGTGCAATTATACTGCTGGTGCTGTCGGTGTTTTCGGTCGGTATGCTGGCGGGTTGCAACACCGTCGCAGGTGC
TGGCAAGGACGTGCAGGGCGCTGGCGAGAAAGTGGAAGACGCTGCGCGCAAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A228K4S8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1E3FXY0 |