Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | phd-doc/HTH_IclR(antitoxin) |
| Location | 1045353..1047118 | Replicon | chromosome |
| Accession | NZ_CP092844 | ||
| Organism | Burkholderia ambifaria strain Q53 | ||
Toxin (Protein)
| Gene name | doc | Uniprot ID | Q0B870 |
| Locus tag | MK974_RS20670 | Protein ID | WP_011659095.1 |
| Coordinates | 1045353..1046264 (+) | Length | 304 a.a. |
Antitoxin (Protein)
| Gene name | phd | Uniprot ID | - |
| Locus tag | MK974_RS20675 | Protein ID | WP_105833378.1 |
| Coordinates | 1046261..1047118 (+) | Length | 286 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MK974_RS20640 (MK974_20620) | 1040718..1041797 | - | 1080 | WP_126225643.1 | porin | - |
| MK974_RS20645 (MK974_20625) | 1042248..1042565 | + | 318 | WP_105833396.1 | non-heme iron oxygenase ferredoxin subunit | - |
| MK974_RS20650 (MK974_20630) | 1042567..1042878 | + | 312 | WP_006758061.1 | hypothetical protein | - |
| MK974_RS20655 (MK974_20635) | 1042933..1044003 | + | 1071 | WP_011659097.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| MK974_RS20660 (MK974_20640) | 1043996..1044766 | + | 771 | WP_105833376.1 | SDR family oxidoreductase | - |
| MK974_RS20665 (MK974_20645) | 1044806..1045333 | + | 528 | WP_012366322.1 | cupin domain-containing protein | - |
| MK974_RS20670 (MK974_20650) | 1045353..1046264 | + | 912 | WP_011659095.1 | alpha/beta fold hydrolase | Toxin |
| MK974_RS20675 (MK974_20655) | 1046261..1047118 | + | 858 | WP_105833378.1 | IclR family transcriptional regulator | Antitoxin |
| MK974_RS20680 (MK974_20660) | 1047115..1047912 | + | 798 | WP_269018260.1 | SDR family oxidoreductase | - |
| MK974_RS20685 (MK974_20665) | 1047905..1049572 | + | 1668 | WP_269018261.1 | thiamine pyrophosphate-binding protein | - |
| MK974_RS20690 (MK974_20670) | 1049565..1050392 | + | 828 | WP_105833381.1 | aspartate dehydrogenase | - |
| MK974_RS20695 (MK974_20675) | 1050492..1051982 | + | 1491 | WP_269018262.1 | aldehyde dehydrogenase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 304 a.a. Molecular weight: 31306.55 Da Isoelectric Point: 6.5933
>T237251 WP_011659095.1 NZ_CP092844:1045353-1046264 [Burkholderia ambifaria]
MSVIDKRERDRTAAFAALLGQFPEQRCAAGAAGTIGYREAGAGEAGAQHAGHALPVVLLHGIGSGAASWVCQLDTLGASR
RVLAWDAPGYGVSTPVHDASPTAADYAASLNAWLEALGIERCVLVGHSLGAIIAGGLCRLMPARIAGLLLISPAGGYGRA
PAETRDTRRDARLAMLDELGPAGLAEQRSGNMLSGFASEDARAWVRWNMARIVPAGYAQATHLLANADLATDLAGFRGRT
AVAVGANDAITPPAACERIAAAAQVELQVIPQAGHAGYVEAPAVYSSLIDTFCRQCDTQRGMA
MSVIDKRERDRTAAFAALLGQFPEQRCAAGAAGTIGYREAGAGEAGAQHAGHALPVVLLHGIGSGAASWVCQLDTLGASR
RVLAWDAPGYGVSTPVHDASPTAADYAASLNAWLEALGIERCVLVGHSLGAIIAGGLCRLMPARIAGLLLISPAGGYGRA
PAETRDTRRDARLAMLDELGPAGLAEQRSGNMLSGFASEDARAWVRWNMARIVPAGYAQATHLLANADLATDLAGFRGRT
AVAVGANDAITPPAACERIAAAAQVELQVIPQAGHAGYVEAPAVYSSLIDTFCRQCDTQRGMA
Download Length: 912 bp
>T237251 NZ_LR822061:2451630-2451896 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAGGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAGGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA
Antitoxin
Download Length: 286 a.a. Molecular weight: 31385.91 Da Isoelectric Point: 6.3573
>AT237251 WP_105833378.1 NZ_CP092844:1046261-1047118 [Burkholderia ambifaria]
MSEPLQQPESDSTKADAGYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYK
LGIAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTTHIVIRDGRDVVFVAKAQCQSPVFSAIRVNVGTRLPAHATTHGH
VLMGDLSLKELRALYPEGTLSRMTSATPETVDALYEVIREDALRGYGISNSSFERGISVVTAPVRNDTQKIVACITVTVP
RPEIDEALIADGLFDKVQRAAAELSRRLNYRSDDEHTFLKALGLR
MSEPLQQPESDSTKADAGYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYK
LGIAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTTHIVIRDGRDVVFVAKAQCQSPVFSAIRVNVGTRLPAHATTHGH
VLMGDLSLKELRALYPEGTLSRMTSATPETVDALYEVIREDALRGYGISNSSFERGISVVTAPVRNDTQKIVACITVTVP
RPEIDEALIADGLFDKVQRAAAELSRRLNYRSDDEHTFLKALGLR
Download Length: 858 bp
>AT237251 NZ_LR822061:2451373-2451630 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|