Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | TscAT/- |
| Location | 899566..900098 | Replicon | chromosome |
| Accession | NZ_CP092825 | ||
| Organism | Staphylococcus aureus strain GY8 | ||
Toxin (Protein)
| Gene name | TscT | Uniprot ID | Q93CD4 |
| Locus tag | MK796_RS04425 | Protein ID | WP_001103942.1 |
| Coordinates | 899778..900098 (+) | Length | 107 a.a. |
Antitoxin (Protein)
| Gene name | TscA | Uniprot ID | - |
| Locus tag | MK796_RS04420 | Protein ID | WP_001058486.1 |
| Coordinates | 899566..899775 (+) | Length | 70 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MK796_RS04375 (894584) | 894584..895804 | - | 1221 | WP_000266157.1 | site-specific integrase | - |
| MK796_RS04380 (895893) | 895893..896621 | - | 729 | WP_000733774.1 | staphylococcal enterotoxin type K | - |
| MK796_RS04385 (896645) | 896645..897373 | - | 729 | WP_001033316.1 | staphylococcal enterotoxin type Q | - |
| MK796_RS04390 (897444) | 897444..897875 | - | 432 | WP_001228759.1 | hypothetical protein | - |
| MK796_RS04395 (897892) | 897892..898350 | - | 459 | WP_000281657.1 | ImmA/IrrE family metallo-endopeptidase | - |
| MK796_RS04400 (898362) | 898362..898694 | - | 333 | WP_001260004.1 | helix-turn-helix transcriptional regulator | - |
| MK796_RS04405 (898887) | 898887..899150 | + | 264 | WP_000243850.1 | helix-turn-helix transcriptional regulator | - |
| MK796_RS04410 (899143) | 899143..899415 | + | 273 | WP_000091731.1 | helix-turn-helix domain-containing protein | - |
| MK796_RS04415 (899427) | 899427..899573 | + | 147 | WP_000784875.1 | hypothetical protein | - |
| MK796_RS04420 (899566) | 899566..899775 | + | 210 | WP_001058486.1 | hypothetical protein | Antitoxin |
| MK796_RS04425 (899778) | 899778..900098 | + | 321 | WP_001103942.1 | DUF1474 family protein | Toxin |
| MK796_RS04430 (900162) | 900162..901031 | + | 870 | WP_241043471.1 | primase alpha helix C-terminal domain-containing protein | - |
| MK796_RS04435 (901048) | 901048..902517 | + | 1470 | WP_241043472.1 | virulence-associated E family protein | - |
| MK796_RS04440 (902803) | 902803..903165 | + | 363 | WP_001039168.1 | hypothetical protein | - |
| MK796_RS04445 (903167) | 903167..903451 | + | 285 | WP_000998181.1 | hypothetical protein | - |
| MK796_RS04450 (903448) | 903448..904089 | + | 642 | WP_001019764.1 | hypothetical protein | - |
| MK796_RS04455 (904606) | 904606..904947 | + | 342 | WP_001190615.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | selk / selq / seb | 876549..909899 | 33350 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12694.22 Da Isoelectric Point: 4.7419
>T237207 WP_001103942.1 NZ_CP092825:899778-900098 [Staphylococcus aureus]
MNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLHVYLKEFSELIQKF
HEIEKASSENFDEESDDAKNSIKVAE
MNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLHVYLKEFSELIQKF
HEIEKASSENFDEESDDAKNSIKVAE
Download Length: 321 bp
>T237207 NZ_LR792630:c69986-69570 [Klebsiella pneumoniae]
GTGAACAAGACTTATATGCTTGATACCTGTATCTGCTCGTTCATCATGCGTGAACAGCCAGAAGCCGTCCTGAAGCGTCT
GGAGCAGGCGGTGCTACGCGGCCACCGTATAGTGGTCTCGGCCATCACCTACTCTGAAATGCGCTTCGGGGCTACCGGCC
CAAAGGCCTCACCACGTCACGTCCAACTGGTCGATGAATTCTGCGCCCGCCTCGATGCCATCCTGCCCTGGGATCGCGCC
GCAGTAGACGCCACCACGAAGATTAAAGTGGCACTGCGGCTGGCCGGGACGCCGATCGGCCCGAACGACACGGCGATTGC
CGGGCACGCCATCGCCGCCGGGGCGATACTGGTAACGAATAATACAAGAGAATTTGAGCGAGTGCCTGACCTGGTGCTGG
AAGACTGGGTGAAGTAA
GTGAACAAGACTTATATGCTTGATACCTGTATCTGCTCGTTCATCATGCGTGAACAGCCAGAAGCCGTCCTGAAGCGTCT
GGAGCAGGCGGTGCTACGCGGCCACCGTATAGTGGTCTCGGCCATCACCTACTCTGAAATGCGCTTCGGGGCTACCGGCC
CAAAGGCCTCACCACGTCACGTCCAACTGGTCGATGAATTCTGCGCCCGCCTCGATGCCATCCTGCCCTGGGATCGCGCC
GCAGTAGACGCCACCACGAAGATTAAAGTGGCACTGCGGCTGGCCGGGACGCCGATCGGCCCGAACGACACGGCGATTGC
CGGGCACGCCATCGCCGCCGGGGCGATACTGGTAACGAATAATACAAGAGAATTTGAGCGAGTGCCTGACCTGGTGCTGG
AAGACTGGGTGAAGTAA
Antitoxin
Download Length: 70 a.a. Molecular weight: 8252.31 Da Isoelectric Point: 4.3718
>AT237207 WP_001058486.1 NZ_CP092825:899566-899775 [Staphylococcus aureus]
MNNEQKEVIEHLVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
MNNEQKEVIEHLVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
Download Length: 210 bp
>AT237207 NZ_LR792630:c70213-69983 [Klebsiella pneumoniae]
ATGAGAACCGTATCGATATTTAAAAATGGCAACAACCGCGCCATCCGTCTGCCTCGTGATCTGGATTTTGAGGGGGTGAG
CGAGCTCGAGATCGTCCGGGAAGGGGACAGCATCATCCTGCGCCCCGTCCGGCCAACCTGGGGATCATTCCTAGAGTACG
AAAAAGCCGATCCAGATTTTATGGCGGAGCGCGAGGATGTTGTCAGCGACGAAGGGCGATTTAACCTGTGA
ATGAGAACCGTATCGATATTTAAAAATGGCAACAACCGCGCCATCCGTCTGCCTCGTGATCTGGATTTTGAGGGGGTGAG
CGAGCTCGAGATCGTCCGGGAAGGGGACAGCATCATCCTGCGCCCCGTCCGGCCAACCTGGGGATCATTCCTAGAGTACG
AAAAAGCCGATCCAGATTTTATGGCGGAGCGCGAGGATGTTGTCAGCGACGAAGGGCGATTTAACCTGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|